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Table 1 Contents of the FANTOM4 instance of EdgeExpressDB: features

From: FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

Features

Source

Genomic co-ordinates

Gene

Entrez [8]

Yes

Transcription start site (L1)

FANTOM4 [1]

Yes

Promoter (L2)

FANTOM4 [1]

Yes

Promoter (L3)

FANTOM4 [1]

Yes

miRNA (pre-)

Mirbase 10.0 [9]

Yes

miRNA (mature)

Mirbase 10.0 [9]

No

Illumina probe

FANTOM4 [1]

Yes/no

Agilent miRNA probe

FANTOM4 [1]

No

TFBS matrix

FANTOM4 [1]

No

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Genome Biology

ISSN: 1474-760X

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