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Table 1 Over-represented TFBSs in GRB target promoters

From: Transcriptional features of genomic regulatory blocks

   Background: bystander gene promoters Background: other CpG island promoters
Family Name Hit p-value Sequence occurrence
p-value
Hit p-value Sequence occurrence
p-value
FORKHEAD Foxa2 0.009 0.0001 0.0001 0.0001
FORKHEAD Foxd3 0.0001 0.0001 0.0001 0.0001
FORKHEAD FOXI1 0.0001 0.0001 0.0001 0.0001
FORKHEAD FOXL1 0.0001 0.0001 0.0001 0.0001
FORKHEAD Foxq1 0.0001 0.0001 0.0002 0.0001
ZN-FINGER, C2H2 Gfi 0.0068 0.0001 0.0001 0.0001
HOMEO Lhx3 0.0003 0.0001 0.0001 0.0001
MADS MEF2A 0.0001 0.0001 0.0008 0.0001
HOMEO Nkx2-5 0.0001 0.0001 0.0001 0.0001
HOMEO Nobox 0.0002 0.0001 0.0001 0.0001
HOMEO Pdx1 0.0001 0.0001 0.0001 0.0001
HOMEO Prrx2 0.0001 0.0001 0.0001 0.0001
ZN-FINGER, C2H2 RREB1 0.0001 0.0001 0.0001 0.0001
HMG Sox5 0.0001 0.0001 0.0001 0.0001
HMG SOX9 0.0025 0.0001 0.0005 0.0001
HMG SRY 0.0001 0.0001 0.0001 0.0001
HOMEO TCF1 0.0017 0.0001 0.0001 0.0001
  1. TFBS content of target gene promoters was compared to two different background sets. The ones over-represented in both comparisons are output in the table. Two distinct p-values represent the significance of the number of profile hits in the target set (hit p-value) and the significance of the number of sequences having at least one hit in the target set (sequence occurrence p-value).