Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays

Table 1 Arabidopsis genome and AtTILE1 array annotation data

Annotation	TAIR7*	AtTILE1	CCGs^†
Protein coding	27,029	25,677	6,269
Pseudogenes or TE	3,889	2,863	81
Noncoding RNAs	1,123
MicroRNA	114	62 (30)	6
Small nucleolar RNA	71	17 (29)	1
Small nuclear RNA	13	0	ND
Pre-transfer RNA	689	2 (129)	0
Ribosomal RNA	4	0	ND
Other	221	121 (29)	15
Total	32,041		6,372

Annotation units receiving consideration had at least two unique corresponding array features. Values in parentheses are the number of transcripts with a single corresponding feature. *The Arabidopsis Information Resource (TAIR) version 7 genome annotation [30]. ^†Circadian clock regulated genes. ND, not determined; TE, transposable element.

ISSN: 1474-760X