|  | Affymetrix | APM | Remap | Cleaner |
---|
U95Av2 | Probes | 200,073 | 163,939 (82%) | 154,485 (77%) | 83,862 (42%) |
 | Probe-sets | 12,625 | 9,130 (72%) | 8,410 (67%) | 6,011 (48%) |
 | EntrezID | 8,975 | 8,781 (98%) | 8,410 (94%) | 5,923 (66%) |
U133plus2 | Probes | 594,532 | 326,265 (55%) | 318,978 (54%) | 153,960 (26%) |
 | Probe-sets | 54,675 | 19,887 (36%) | 18,303 (33%) | 12,162 (22%) |
 | EntrezID | 20,327 | 18,596 (91%) | 18,303 (90%) | 11,728 (58%) |
- We report the number of probes, probe-sets, probe clusters and unique EntrezIDs for the U95av2 and U133plus2 platforms according to Affymetrix, AffyProbeMiner (APM), Remap, and Cleaner annotation. Remap is the first stage of Cleaner, and here it is used to report the number of probes with homology to RefSeq transcripts and the number of probe sets and genes with at least one probe homolog. For simplicity of presentation, we refer to Remap and Cleaner probe clusters as probe sets in this table.