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Table 3 Features of variable internal tandem repeats present in paralogs of the human morpheus gene

From: Tandem repeats modify the structure of human genes hosted in segmental duplications

   

ITRs in genome

   

ITRs in mRNA

Group ID

Genomic locus of exon 8

Exon length (bp)

Type1

Type2

CNVs

Associated proteins or transcripts

Exon length (aa)

Type1

Type2

G29

chr.16:68567795-68568136

342

1

0

1

NR_003610, PDXC2 * (U)

-

1

0

 

chr.18:11928734-11929237

504

2

2

0

-

-

-

-

 

chr.16:14952973-

408

3

0

4

BC023572 * (M)

-

2

0

 

14953380

    

NP_008916, morpheus (B)

136

3

0

 

chr.16:15365020-15365427

408

3

0

2

-

-

-

-

 

chr.16:11609511-11609918

408

3

1

0

-

-

-

-

 

chr.16:28261432-28262010

579

3

2

1

-

-

-

-

 

chr.16:15105678-15106116

439

4

0

1

-

-

-

-

 

chr.16:16351450-16351914

465

4

0

3

BAC85871 (U)

155

4

0

 

chr.16:16394814-16395312

465

4

0

3

NP_848636 (M)

155

4

0

 

chr.16:18319329-18319793

465

4

0

5

NP_848636 (M)

155

4

0

 

chr.16:18359482-18359946

465

4

0

5

NP_848636 (M)

155

4

0

 

chr.16:28375249-28375848

600

4

2

2

-

-

-

-

 

chr.16:28690975-28691574

600

4

2

4

-

-

-

-

 

chr.16:28576850-28577449

600

4

2

5

-

-

-

-

 

chr.16:72982790-72983476

687

4

2

5

AAI60029, NPIPL2 (U)

229

4

2

 

chr.16:28970894-28971553

660

4

2

1

-

-

-

-

G40

chr.16:22452448-22455204

2757

35

4

12

NP_001129337 (U)

919

35

4

      

AAH94882 (B)

544

18

4

      

NP_569731, NPIPL3 (B)

464

14

4

 

chr.16:29300271-29303111

2841

37

3

2†‡

-

-

-

-

 

chr.16:30141785-30144625

2841

37

4

2

BAC87606 (B)

794

29

4

 

chr.16:21321092-21324115

3024

39

4

5†§

BAG65049 (U)

970

39

3

      

BAG64593 (U)

849

31

4

      

NP_569731 (B)

464

14

4

 

chr.16:21753543-21756566

3024

39

4

10†

BAA13210 (B)

840

31

4

  1. The paralogous sequences of morpheus exon 8 were detected and characterized for the presence and number of type 1 and 2 ITRs. Group IDs refer to Additional file 1. Exon length is reported in base pairs and in amino acids (aa) only when supported by coding mRNAs. Unique (U), best (B) or multiple (M) transcript support is reported for each locus. CNVs that overlap the genomic locus of exon 8 are indicated. *ITRs residing in non-coding RNAs. †CNVs overlapping exclusively with ITRs, and corresponding to identifiers ‡30774, §30757 and 30761 of the Database of Genomic Variants.
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Genome Biology

ISSN: 1474-760X

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