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Table 1 Experimental and in silico DNA indexes and parameters of GAP model

From: Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays

Sample ID DNA index FCM DNA index GAP DNA index OverUnder Tumor content 1-pBAF Contraction qLRR
BLC_B1_T14 1.14 0.85 0.98 0.85 0.37
BLC_B1_T17 0.84 0.82 0.97 0.77 0.17
BLC_B1_T19 1.6 1.63 2.93 0.4 0.27
BLC_B1_T20 1.41 1.48 3.06 0.4 0.2
BLC_B1_T22a 1.98 0.94 1.02 0.87 0.44
BLC_T07 1.68 1.49 3.12 0.44 0.28
BLC_T09 2.02 1.85 1.89 0.92 0.47
BLC_T10 1.88 1.9 1.07 0.95 0.47
BLC_T12 1.51 1.54 2.56 0.65 0.35
BLC_T15 1.11 0.89 0.99 0.74 0.27
BLC_T23 1.32 1.39 2.72 0.41 0.21
BLC_T31 1.91 1.84 1.48 0.84 0.45
BLC_T34a 1.55 0.99 1.04 0.87 0.42
BLC_T37 1.51 1.53 1.44 0.89 0.44
L_B1_T24B 1.84 1.64 2.61 0.59 0.29
L_B1_T25A 1.00 1.04 3.03 0.39 0.17
L_B1_T30 1.84 1.83 1.53 0.78 0.42
L_B1_T47 1.00 1.03 1.47 0.45 0.17
  1. aTwo samples with clear near-diploid pattern of GAP and discordant experimental DNA indexes.