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Table 1 Efficiency of target enrichment

From: Enrichment of sequencing targets from the human genome by solution hybridization

Sample

Replicate

Filtered reads1 (Mb)

Mapped bases, Mb

Uniquely mapped vases, Mb

   

HG18

On target

On or near target2

LINE

SINE

HG18

On target

On or near target2

NA15510

Capture 1

8,232,578 (296.4)

291.2

119.8

147.1

21.4

12.4

256.7

115.1

141.6

NA15510

Capture 2

8,106,056 (291.8)

286.8

107.1

130.9

24.1

13.9

252.8

102.9

126.0

HE00069

Capture 1

7,743,638 (278.8)

274.9

112.7

142.2

19.5

10.3

246.0

108.5

137.3

HE00069

Capture 2

8,451,260 (304.2)

300.3

112.1

140.2

24.9

12.8

268.5

108.0

135.4

 

Average

8,133,383 (292.8)

288.3

112.9

140.1

22.4

12.4

256.0

108.6

135.1

  1. 1Number of high-quality reads from Illumina pipeline v1.3 and the megabases they compose.
  2. 2Near is defined as 150 bp upstream or downstream of the target sequence.