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Table 2 Hybrid selection-enhanced detection of fusion transcripts

From: Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

5' Gene

5' Chr.

3' Gene

3' Chr.

Beforea

Aftera

BCR

22

ABL1

9

13

874

NUP214 b

9

XKR3 b, c

22

9

152

SNHG3-RCC1 b, c

1

PICALM b

11

1

39

PRIM1 c, d

12

NACA b, d

12

0

22

NCKIPSD d

3

CELSR3 c, d

3

0

5

SLC29A1 c, d

6

HSP90AB1 d

6

0

2

  1. aNumber of sequence reads before and after hybrid selection. bFusion transcript reads identified from more than one exon in this gene. cNot included in hybrid selection bait genes. dNot previously annotated, read-through transcripts between adjacent genes.