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Table 3 Genes and transcripts affected by deletions predicted from aberrantly mapping sequence pairs

From: Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels

Gene

Transcript

Strain

Exons

1700001C19Rik

ENSMUST00000073143

CAST/Ei

1

Alk

ENSMUST00000086639

A/J

19

Capn13

ENSMUST00000095208

CAST/Ei

7

EN

ENSMUST00000052440

CAST/Ei

1, 2

 

ENSMUST00000077420

CAST/Ei

1

 

ENSMUST00000079363

CAST/Ei

1

 

ENSMUST00000086423

CAST/Ei

1

ENSMUSG00000060087

ENSMUST00000077584

A/J

1, 2

Galnt14

ENSMUST00000024858

CAST/Ei

15

Gfer

ENSMUST00000046839

A/J

3

 

ENSMUST00000046839

CAST/Ei

3

mmu-mir-692-1

ENSMUST00000102263

A/J

1

 

ENSMUST00000102263

CAST/Ei

1

Olfr55

ENSMUST00000112168

CAST/Ei

1

Prss28

ENSMUST00000015267

A/J

1-7

Rpl35a

ENSMUST00000087940

A/J

1

 

ENSMUST00000087940

CAST/Ei

1

Tbc1d24

ENSMUST00000040474

A/J

9

 

ENSMUST00000040474

CAST/Ei

9

 

ENSMUST00000097376

CAST/Ei

10

U6

ENSMUST00000102026

A/J

1

V1rf3

ENSMUST00000077301

CAST/Ei

1

Wiz

ENSMUST00000087699

A/J

4