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Table 2 Stop codons gained and lost relative to reference

From: Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels

Gene

Description

Codon

A/J

  

   Stops gained

  

Abca3

ATP-binding cassette sub-family A member 3

1069/1704

Lmf1

Transmembrane protein 12

182/188

ENSMUSG00000073427

Adult male hypothalamus cDNA

109/132

ENSMUSG00000002791

 

109/311

EG630249

Butyrophilin-like 7

570/580

H2-T23

H-2 class I histocompatibility antigen, D-37 alpha chain precursor

218/357

Rpp21

Ribonuclease P protein subunit p21

70/71

ENSMUSG00000073395

Adult male epididymis cDNA

158/163

   Stops lost

  

Rmcs2

Response to metastatic cancers 2 gene

263/263

ENSMUSG00000073373

12 days embryo female mullerian duct includes surrounding region cDNA

42/42

CAST/Ei

  

   Stops gained

  

Pabpc3

Poly(A) binding protein, cytoplasmic 3 gene

631/644

ENSMUSG00000073464

Putative uncharacterized protein

107/140

Smok2a

Sperm motility kinase 2B gene

96/505

BC052484

Mesothelin-like gene

673/686

Uhrf1 bp1

UHRF1 (ICBP90) binding protein 1 gene

89/93

C920016K16Rik

RIKEN cDNA C920016K16 gene

13/468

ENSMUSG00000067203

 

3/385

2610110G12Rik

RIKEN cDNA 2610110G12 gene

398/399

H2-T9

Histocompatibility 2, T region locus 22 gene

126/380

Rpp21

Ribonuclease P 21 subunit (human) gene

70/72

ENSMUSG00000044538

 

305/320

Olfr138

Olfactory receptor 138 gene

203/313

9130008F23Rik ENSMUSG00000054951

RIKEN cDNA 9130008F23 gene

55+106/182

Trem2

Triggering receptor expressed on myeloid cells 2 gene

148/250

EG328839

Predicted gene, EG328839

13/115

Yipf4

Yip1 domain family, member 4 gene

30/290

ENSMUSG00000079336

 

3/13

ENSMUSG00000066938

Putative uncharacterized protein fragment

94/108

Thada

Thyroid adenoma associated gene

1791/1950

ENSMUSG00000071036

Putative uncharacterized protein MCG125396

53/120

   Stops lost

  

Rmcs2

Response to metastatic cancers 2 gene

263/263

H2-Bl

Histocompatibility 2, blastocyst gene

263/263

Foxn2

Forkhead box N2 gene

212/212

ENSMUSG00000073373

Putative uncharacterized protein

42/42