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Table 2 ALLPATHS, Velvet and EULER assemblies of five microbial genomes: contiguity

From: ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

 

ALLPATHS

Velvet

EULER

Contig N50 (kb)

   

   S. aureus

477

87

68

   E. coli

337

62

19

   R. sphaeroides

156

151

3

   S. pombe

51

55

24

   N. crassa

19

16

14

Scaffold N50 (kb)

   

   S. aureus

611

562

68

   E. coli

2,680

298

19

   R. sphaeroides

858

1,126

3

   S. pombe

222

422

24

   N. crassa

58

186

14

  1. For five genomes, statistics from ALLPATHS, Velvet, and EULER assemblies are shown. Contiguity refers to contig and scaffold N50 values.