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Table 2 ALLPATHS, Velvet and EULER assemblies of five microbial genomes: contiguity

From: ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

  ALLPATHS Velvet EULER
Contig N50 (kb)    
   S. aureus 477 87 68
   E. coli 337 62 19
   R. sphaeroides 156 151 3
   S. pombe 51 55 24
   N. crassa 19 16 14
Scaffold N50 (kb)    
   S. aureus 611 562 68
   E. coli 2,680 298 19
   R. sphaeroides 858 1,126 3
   S. pombe 222 422 24
   N. crassa 58 186 14
  1. For five genomes, statistics from ALLPATHS, Velvet, and EULER assemblies are shown. Contiguity refers to contig and scaffold N50 values.
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