Mining physical protein-protein interactions from the literature

Table 6 Examples for template features used in the profile-based method

activation of * Protein₁ * to * Protein₂
interaction of * Protein₁ * and * Protein₂
association of * Protein₁ * with * Protein₂
interaction between * Protein₁ * and * Protein₂
binding of * Protein₁ * to * Protein₂
Protein₁ * bind * to * Protein₂
Protein₁ * activate * Protein₂
activation of * Protein₁ * with * Protein₂
Protein₁ * coimmunoprecipitate * with * Protein₂
Protein₁ * copurify * with * Protein₂
Protein₁ * mediate * interaction * Protein₂
Protein₁ * form * complex * with * Protein₂
Protein₁ * phosphorylate * Protein₂
Protein₁ * interact * with * Protein₂
Protein₁ * associate * with * Protein₂
Protein₁ * in * complex * with * Protein₂
Protein₁ * regulate * Protein₂
regulation of * Protein₁ * by * Protein₂
yeast * Protein₁ * screen * Protein₂
yeast * strain * Protein₁ * and * Protein₂
yeast * Protein₁ * to * function * Protein₂
Protein₁ * lead * to * activation * of * Protein₂

Template examples are listed in this table. These templates are reproduced from [26]. The complete list of template features is available upon request from the authors. The asterisk in the template features indicates that any word can be skipped.