From: Mining physical protein-protein interactions from the literature
Compared models | Whole collection | SwissProt only article collection | ||||
---|---|---|---|---|---|---|
 | Precision | Recall | F1 score | Precision | Recall | F1 score |
Mean | 0.1062 | 0.1858 | 0.1035 | 0.1160 | 0.2000 | 0.1127 |
Standard deviation | 0.0945 | 0.1001 | 0.0761 | 0.1035 | 0.1062 | 0.0836 |
Median | 0.0755 | 0.1961 | 0.0788 | 0.0808 | 0.2156 | 0.0842 |
Best reported in terms of F1 score [8] | 0.3908 | 0.2970 | 0.2849 | 0.3893 | 0.3073 | 0.2885 |
Template-based method (threshold = 0.0) | 0.1373 | 0.2905 | 0.1578 | 0.1566 | 0.3189 | 0.1784 |
Template-based method (threshold = 80.0) | 0.2177 | 0.2651 | 0.2038 | 0.2434 | 0.2828 | 0.2247 |
Profile-based method | 0.3096 | 0.2935 | 0.2623 | 0.3695 | 0.3268 | 0.3042 |