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Table 2 Pooled performance measures for each category

From: An en masse phenotype and function prediction system for Mus musculus

 

P01R*

P05R

P10R

P20R

P50R

AUC-ROC

BP [3,10]

0.41

0.23

0.17

0.08

0.002

0.75

BP [11,30]

0.41

0.28

0.22

0.14

0.01

0.79

BP [31,100]

0.57

0.51

0.42

0.30

0.06

0.75

BP [101,300]

0.60

0.49

0.43

0.32

0.09

0.85

CC [3,10]

0.78

0.43

0.45

0.24

0.02

0.85

CC [11,30]

0.72

0.54

0.49

0.38

0.04

0.86

CC [31,100]

0.71

0.65

0.51

0.36

0.04

0.86

CC [101,300]

0.92

0.72

0.59

0.46

0.12

0.87

MF [3,10]

0.65

0.52

0.52

0.48

0.25

0.88

MF [11,30]

0.70

0.68

0.62

0.56

0.34

0.90

MF [31,100]

0.84

0.74

0.66

0.60

0.43

0.93

MF [101,300]

0.86

0.70

0.69

0.61

0.47

0.92

Pheno [3,10]

0.10

0.07

0.03

0.003

0.0006

0.70

Pheno [11,30]

0.20

0.13

0.07

0.02

0.003

0.75

Pheno [31,100]

0.31

0.20

0.14

0.07

0.009

0.78

Pheno [101,300]

0.44

0.33

0.25

0.17

0.04

0.78

  1. *P01R is the precision at 1% recall, and the other headers follow this pattern. AUC, area under the curve; BP, biological process; CC, cellular component; MF, molecular function; Pheno, phenotype; ROC, receiver operating characteristic.