Table 3 Gene attributes used in guilt-by-profiling GO term predictions
Gene characteristic type | No. of characteristics | Source |
|---|---|---|
Phenotype | 27 | Giaever et al. [44] |
Phenotype | 12 | Parsons et al. [45] |
Phenotype | 78 | Lum et al. [19] |
Phenotype | 1 | Baetz et al. [46] |
Phenotype | 4 | Tucker et al. [47] |
Phenotype | 22 | Dudley et al. [48] |
Protein complex | 232 | Gavin et al. [5] |
Protein complex | 493 | Ho et al. [6] |
Protein complex and cellular localization | 8 | Ng et al. [49] |
Protein complex and cellular localization | 10 | Robert et al. [50] |
Protein cellular localization | 23 | Huh et al. [21] |
Protein cellular localization | 26 | Kumar et al. [38] |
Transcriptional regulator | 352 | Harbison et al. [51] |
Transcriptional regulator | 106 | Lee et al. [52] |
Protein sequence pattern | 283 | ProDom [53] |
Protein sequence pattern | 1,930 | Pfam [8] |
Protein sequence pattern | 515 | TIGRFAM [54] |
Protein sequence pattern | 928 | PROSITE [11] |
Protein sequence pattern | 378 | PANTHER [55] |
Protein sequence pattern | 328 | PRINTs [10] |
Protein sequence pattern | 3,092 | InterPro [9] |
Total | 8,848 |