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Table 3 Gene attributes used in guilt-by-profiling GO term predictions

From: Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiaegene function

Gene characteristic type No. of characteristics Source
Phenotype 27 Giaever et al. [44]
Phenotype 12 Parsons et al. [45]
Phenotype 78 Lum et al. [19]
Phenotype 1 Baetz et al. [46]
Phenotype 4 Tucker et al. [47]
Phenotype 22 Dudley et al. [48]
Protein complex 232 Gavin et al. [5]
Protein complex 493 Ho et al. [6]
Protein complex and cellular localization 8 Ng et al. [49]
Protein complex and cellular localization 10 Robert et al. [50]
Protein cellular localization 23 Huh et al. [21]
Protein cellular localization 26 Kumar et al. [38]
Transcriptional regulator 352 Harbison et al. [51]
Transcriptional regulator 106 Lee et al. [52]
Protein sequence pattern 283 ProDom [53]
Protein sequence pattern 1,930 Pfam [8]
Protein sequence pattern 515 TIGRFAM [54]
Protein sequence pattern 928 PROSITE [11]
Protein sequence pattern 378 PANTHER [55]
Protein sequence pattern 328 PRINTs [10]
Protein sequence pattern 3,092 InterPro [9]
Total 8,848  
  1. GO, Gene Ontology.