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Table 1 MIPS functional classes used to compare with MRF-NB approach

From: Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiaegene function

Functional categories No. of genes annotated
Cell cycle and DNA processing 600
Cell fate 411
Cell rescue, defense and virulence 264
Cellular transport and transport mechanisms 479
Control of cellular organization 192
Energy 242
Metabolism 1,048
Protein fate (folding, modification, destination) 578
Protein synthesis 335
Regulation of/interaction with cellular environment 193
Transcription 753
Transport facilitation 306
Others (cellular communication/signal transduction mechanism, or protein activity regulation, or protein with binding function or cofactor requirement (structural or catalytic), or transposable elements, viral and plasmid proteins) 81
Total 3,588
  1. MIPS, Munich Information Center for Protein Sequences; MRF, Markov random field; NB, naïve bayes.