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Table 1 MIPS functional classes used to compare with MRF-NB approach

From: Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiaegene function

Functional categories

No. of genes annotated

Cell cycle and DNA processing

600

Cell fate

411

Cell rescue, defense and virulence

264

Cellular transport and transport mechanisms

479

Control of cellular organization

192

Energy

242

Metabolism

1,048

Protein fate (folding, modification, destination)

578

Protein synthesis

335

Regulation of/interaction with cellular environment

193

Transcription

753

Transport facilitation

306

Others (cellular communication/signal transduction mechanism, or protein activity regulation, or protein with binding function or cofactor requirement (structural or catalytic), or transposable elements, viral and plasmid proteins)

81

Total

3,588

  1. MIPS, Munich Information Center for Protein Sequences; MRF, Markov random field; NB, naïve bayes.