Summary of reconciliation methods. Given a set of probabilistic values obtained from logistic regression (, i ∈ I), and A
denoting the set of ancestors and descendants, respectively, of Gene Ontology (GO) term i, we compute reconciled probabilistic predictions p
using the 11 strategies described in the text. Detailed descriptions of each method are given Additional data file 1. Colored boxes indicate the color that is used to represent this method on all subsequent plots.