Skip to main content

Table 2 Protein features

From: NetGrep: fast network schema searches in interactomes

Protein feature

Source

Gene names and aliases

BioGRID [50] 2.0.34

Amino acid sequences

Biomart [58]

Paralogs

COG [59], Biomart [58]

Pfam A/B motifs

Pfam [31] 21.0

SMART [32, 33] motifs

InterPro [60] 15.0

Prosite [30] motifs

 

SCOP [34] superfamilies

 

GO functional annotations

GO [35] 05/2007 download

  1. Protein features used to annotate proteins in the built-in data sets provided with NetGrep.