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Table 2 Protein features

From: NetGrep: fast network schema searches in interactomes

Protein feature Source
Gene names and aliases BioGRID [50] 2.0.34
Amino acid sequences Biomart [58]
Paralogs COG [59], Biomart [58]
Pfam A/B motifs Pfam [31] 21.0
SMART [32, 33] motifs InterPro [60] 15.0
Prosite [30] motifs  
SCOP [34] superfamilies  
GO functional annotations GO [35] 05/2007 download
  1. Protein features used to annotate proteins in the built-in data sets provided with NetGrep.