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Table 1 mBAF statistics for homozygous SNPs in HapMap samples analyzed on Illumina BeadChips

From: Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays

Data set Illumina platform Number of samples 95th percentile mBAFAA+BB 99th percentile mBAFAA+BB Mean mBAFAA ± SD Mean mBAFBB ± SD
Reference 1 300k v1 111 0.99 0.973 0.998 ± 0.006 0.998 ± 0.006
Reference 2 300k v2 120 0.989 0.968 0.997 ± 0.005 0.998 ± 0.006
Reference 3 370k 123 0.98 0.961 0.993 ± 0.008 0.996 ± 0.009
Reference 4 550k 120 0.982 0.966 0.993 ± 0.008 0.998 ± 0.006
  1. SD, standard deviation.