Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays

Table 1 mBAF statistics for homozygous SNPs in HapMap samples analyzed on Illumina BeadChips

Data set	Illumina platform	Number of samples	95^th percentile mBAF_AA+BB	99^th percentile mBAF_AA+BB	Mean mBAF_AA ± SD	Mean mBAF_BB ± SD
Reference 1	300k v1	111	0.99	0.973	0.998 ± 0.006	0.998 ± 0.006
Reference 2	300k v2	120	0.989	0.968	0.997 ± 0.005	0.998 ± 0.006
Reference 3	370k	123	0.98	0.961	0.993 ± 0.008	0.996 ± 0.009
Reference 4	550k	120	0.982	0.966	0.993 ± 0.008	0.998 ± 0.006

ISSN: 1474-760X