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Table 6 Characterization of our high ranking Populus candidate G-protein coupled receptors

From: Whole proteome identification of plant candidate G-protein coupled receptors in Arabidopsis, rice, and poplar: computational prediction and in-vivo protein coupling

Locus QFC GPCRHMM TMHMM HMMTOP Phobius Pcut-T Pcut-H Query e-value
Upper bin          
   Pop205267 * * 7 (out) 7 (out) 7 (out)    Cand3,4,5 <e-110
   Pop241510 * * 7 (out) 7 (out) 7 (out) 7 (out) 7 (out) Cand7 e-130
   Pop254437 * * 7 (out) 7 (out) 7 (out) 7 (out) 7 (out)   
   Pop256636 * * 7 (out) 7 (out) 7 (out)    Cand7 0.0
   Pop561523 * * 7 (out) 7 (out) 7 (out) 7 (out) 7 (out) Cand7 0.0
   Pop569632 * * 7 (out) 7 (out) 7 (out)    Cand1 e-32
   Pop742547 * * 7 (out) 7 (out) 7 (out)    Cand1 e-110
   Pop797267 * * 7 (out) 8 (in) 7 (out) 7 (out) 7 (out) Cand7 e-129
   Pop820940 * * 7 (out) 7 (out) 7 (out)    GCR1 e-142
   Pop272274 * * 7 (out) 8 (in) 7 (out)    Cand1 e-114
   Pop554569 * * 7 (out) 7 (out) 7 (out) 6 (in) 7 (out) Cand7 e-130
   Pop647588 * * 6 (in) 7 (out) 7 (out)     
Lower bin          
   Pop294952 * -1.05 7 (out) 7 (out) 7 (out)    Cand2,8 <e-115
   Pop240991 * -2.37 7 (out) 7 (out) 7 (out)    Cand2,8 <e-117
   Pop273474 * -2.99 7 (out) 7 (out) 7 (out) 7 (out) 7 (out)   
   Pop822025 * -3.67 7 (out) 7 (out) 7 (out)     
   Pop279432 * -4.84 7 (in) 7 (out) 7 (out)     
   Pop796139 * -5.58 7 (in) 8 (in) 7 (in)     
   Pop762585 * -6.23 7 (out) 7 (out) 7 (out)     
   Pop832788 * -8.32 7 (out) 7 (out) 7 (out)     
  1. Protein sequences orthologous to our Arabidopsis candidate GPCRs demonstrated to interact with the Arabidopsis Gα subunit are shown in bold and BLAST e-values are provided to support their identification (see Table 1 for additional details).