Figure 3
From: Plastic architecture of bacterial genome revealed by comparative genomics of Photorhabdus variants
Variation in genomic architecture of the TT01 variants. (a) Schematic representation of the I-CeuI restriction map of the TT01/I Photorhabdus luminescens reference genome. (b) Schematic reconstruction of I-CeuI pulsed field gel electrophoresis (PFGE) patterns for TT01/I and the six variants representing gels presented in Additional data file 2. Fragment sizes were calculated using the TT01/I genome as a reference. Lane 1: TT01/I. Lane 2: TT01/II. Lane 3: TT01α/I. Lane 4: TT01α/II. Lane 5: TT01α'/II. Lane 6: VAR*. Lane 7: REV. (c) Clustering of the PFGE patterns. Patterns were compared using the Dice coefficient for each pair. Patterns were clustered by UPGMA.