Table 3 SNP genotyping success categorized by polymorphic quality score
Polymorphic quality score | 2 | 3 | 4 | 5 |
|---|---|---|---|---|
Number of genotyped loci | 5 | 15 | 28 | 11 |
Number of polymorphic loci | 2 | 10 | 24 | 6 |
Number of fixed/failed loci | 3 | 5 | 4 | 5 |
Successful SNP detection (%) | 40 | 66.7 | 85.7 | 54.5 |