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Table 3 SNP genotyping success categorized by polymorphic quality score

From: Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids

Polymorphic quality score 2 3 4 5
Number of genotyped loci 5 15 28 11
Number of polymorphic loci 2 10 24 6
Number of fixed/failed loci 3 5 4 5
Successful SNP detection (%) 40 66.7 85.7 54.5
  1. SNP, single nucleotide polymorphism.