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Table 2 SNP genotyping success categorized by detection method

From: Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids

SNP detection method Control genes Automated Manual BLAST
Number of genotyped loci 13 59 24
Number of polymorphic loci 10 42 16
Number of fixed loci 3 11 4
Number of failed loci 0 6 4
Successful SNP detection (%) 76.9 71.2 66.7
  1. BLAST, Basic Local Alignment Search Tool; SNP, single nucleotide polymorphism.