Table 2 SNP genotyping success categorized by detection method
SNP detection method | Control genes | Automated | Manual BLAST |
|---|---|---|---|
Number of genotyped loci | 13 | 59 | 24 |
Number of polymorphic loci | 10 | 42 | 16 |
Number of fixed loci | 3 | 11 | 4 |
Number of failed loci | 0 | 6 | 4 |
Successful SNP detection (%) | 76.9 | 71.2 | 66.7 |