Table 2 Transcripts that are more abundant in polyA(±) samples than in polyA(+) samples
Locus | TAIR7 annotation | PolyA(+) (log2) | PolyA(±) (log2) |
|---|---|---|---|
AT1G12013 | H/ACA-box snoRNA | 9.07 | 13.51 |
AT1G15405 | Unknown gene | 11.07 | 14.59 |
AT1G31960 | Unknown protein | 5.34 | 8.74 |
AT1G33860 | Unknown protein | 8.10 | 11.78 |
AT1G34700 | Mutator-like transposase family | 4.69 | 8.14 |
AT1G35080 | Similar to unknown protein | 3.70 | 7.03 |
AT1G35640 | Unknown protein | 5.91 | 9.29 |
AT1G41726 | Pseudogene | 6.73 | 10.30 |
AT1G61275 | U12 snRNA | 7.11 | 12.45 |
AT2G01022 | Gypsy-like retrotransposon family | 5.72 | 9.43 |
AT2G05567 | Pseudogene | 4.62 | 8.59 |
AT2G06250 | Pseudogene | 6.45 | 9.87 |
AT2G06370 | Pseudogene | 6.36 | 9.71 |
AT2G07709 | Pseudogene | 7.40 | 11.28 |
AT2G07711 | Pseudogene | 7.05 | 10.42 |
AT2G07712 | Pseudogene | 6.90 | 10.87 |
AT2G07717 | Pseudogene | 7.72 | 11.22 |
AT2G08986 | Similar to unknown protein | 6.64 | 10.15 |
AT2G10285 | Similar to unknown protein | 6.16 | 9.85 |
AT2G10720 | Pseudogene | 7.15 | 10.67 |
AT2G10790 | Pseudogene | 7.03 | 10.86 |
AT2G12240 | CACTA-like transposase family | 5.30 | 9.98 |
AT2G12320 | Similar to unknown protein | 6.56 | 10.05 |
AT2G12750 | Gypsy-like retrotransposon family | 7.20 | 10.71 |
AT2G13860 | Gypsy-like retrotransposon | 6.88 | 10.29 |
AT2G25255 | Encodes a defensin-like (DEFL) family protein | 5.65 | 9.04 |
AT3G24370 | Similar to unknown protein | 5.06 | 9.58 |
AT3G29570 | Similar to ATEXT3 | 5.41 | 9.60 |
AT3G30846 | Gypsy-like retrotransposon family | 6.78 | 10.21 |
AT3G32010 | Gypsy-like retrotransposon family (Athila) | 5.37 | 9.41 |
AT3G32880 | Gypsy-like retrotransposon family (Athila) | 6.37 | 10.60 |
AT3G42251 | Pseudogene | 5.82 | 9.24 |
AT3G42750 | Similar to unknown protein | 4.44 | 7.85 |
AT3G43154 | Pseudogene | 5.21 | 9.22 |
AT3G43160 | MEE38 | 7.42 | 11.95 |
AT3G43862 | Athila retroelement ORF2-related | 6.07 | 10.44 |
AT4G05290 | Similar to unknown protein | 5.39 | 10.08 |
AT4G06531 | Pseudogene | 4.21 | 7.93 |
AT4G06573 | Athila retroelement ORF1 protein | 7.25 | 11.01 |
AT4G06710 | Pseudogene | 6.53 | 11.72 |
AT4G06736 | Pseudogene | 6.27 | 9.75 |
AT4G08080 | Gypsy-like retrotransposon family (Athila) | 6.84 | 10.74 |
AT5G32400 | Hypothetical protein | 6.92 | 10.32 |
AT5G32404 | Pseudogene | 4.90 | 9.12 |
AT5G32475 | Athila retroelement ORF2-related | 5.75 | 9.37 |
AT5G32483 | Pseudogene | 6.41 | 9.89 |
AT5G32495 | Pseudogene | 5.74 | 9.44 |
AT5G32517 | Pseudogene | 5.91 | 9.34 |
AT5G33150 | Pseudogene | 7.33 | 10.75 |
AT5G34970 | Similar to unknown protein | 5.16 | 8.63 |