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Table 6 Database content

From: Assignment of isochores for all completely sequenced vertebrate genomes using a consensus

      Entropy distance: consensus and each method  
Genome   Version Source* Size IsoF GC-P BASIO L-S GC %
Bos taurus Cow bostau4-0 HGSC 2.5 0.3 1.9 0.3 2.0 41.8
Canis familiaris Dog canfam2 UCSC 2.5 0.3 1.3 0.3 1.2 41.3
Danio rerio Zebrafish danrer4 UCSC 1.5 0.4 2.1 0.4 2.3 36.5
Danio rerio Zebrafish danrer7 Ensembl 1.3 0.3 1.9 0.5 1.9 36.5
Drosophila melanogaster Fruit fly dm2 UCSC 0.13 0.4 1.7 0.4 1.8 42.2
Equus ferus caballus Horse equCab1 UCSC 2.0 0.3 1.4 0.3 1.4 41.5
Gallus gallus Chicken galgal3 UCSC 1.0 0.6 0.4 0.6 0.5 41.3
Gasterosteus aculeatus Stickleback gasAcu1 UCSC 0.45 0.3 1.9 0.3 1.9 44.6
Homo sapiens Human hg17 UCSC 3.0 0.3 0.3 0.6 0.3 40.9
Homo sapiens Human hg18 UCSC 3.0 0.3 1.2 0.4 1.2 40.9
Mus musculus Mouse mm8 UCSC 2.6 0.3 1.0 0.6 1.1 41.8
Mus musculus Mouse mm9 UCSC 2.6 0.3 1.1 0.5 1.2 41.8
Monodelphis domestica Opossum monDom4 UCSC 3.4 1.0 1.4 0.9 1.4 37.8
Monodelphis domestica Opossum monDom5 Broad 3.4 1.1 1.4 0.9 1.4 37.8
Ornithorhynchus anatinus Platypus ornAna1 UCSC 0.43 0.4 1.7 0.3 1.8 45.1
Oryzias latipes Medeka oryLat1 UCSC 0.58 0.4 2.1 0.3 2.2 40.5
Pan troglodytes Chimpanzee pantro2 UCSC 3.1 0.2 1.6 0.3 1.7 40.7
Macaca mulatta Macaque rheMac2 UCSC 2.7 0.3 1.8 0.3 2.1 40.6
Rattus norvegicus Rat rn4 UCSC 2.7 0.3 1.9 0.3 2.1 41.9
Tetraodon nigroviridis Pufferfish tetNig1 UCSC 0.2 0.3 1.7 0.3 1.7 45.8
  1. *Genome downloaded from: UCSC, University of California Santa Cruz Genome Browser; HGSC, Human Genome Sequencing Center at Baylor College of Medicine; Broad, The Broad Institute; Ensembl, Ensembl genome database. Genome size in gigabytes, without unassembled parts. IsoF, IsoFinder; GC-P, GC-Profile; L-S, least-squares.