Assignment of isochores for all completely sequenced vertebrate genomes using a consensus

Table 6 Database content

					Entropy distance: consensus and each method
Genome		Version	Source*	Size^†	IsoF	GC-P	BASIO	L-S	GC %
Bos taurus	Cow	bostau4-0	HGSC	2.5	0.3	1.9	0.3	2.0	41.8
Canis familiaris	Dog	canfam2	UCSC	2.5	0.3	1.3	0.3	1.2	41.3
Danio rerio	Zebrafish	danrer4	UCSC	1.5	0.4	2.1	0.4	2.3	36.5
Danio rerio	Zebrafish	danrer7	Ensembl	1.3	0.3	1.9	0.5	1.9	36.5
Drosophila melanogaster	Fruit fly	dm2	UCSC	0.13	0.4	1.7	0.4	1.8	42.2
Equus ferus caballus	Horse	equCab1	UCSC	2.0	0.3	1.4	0.3	1.4	41.5
Gallus gallus	Chicken	galgal3	UCSC	1.0	0.6	0.4	0.6	0.5	41.3
Gasterosteus aculeatus	Stickleback	gasAcu1	UCSC	0.45	0.3	1.9	0.3	1.9	44.6
Homo sapiens	Human	hg17	UCSC	3.0	0.3	0.3	0.6	0.3	40.9
Homo sapiens	Human	hg18	UCSC	3.0	0.3	1.2	0.4	1.2	40.9
Mus musculus	Mouse	mm8	UCSC	2.6	0.3	1.0	0.6	1.1	41.8
Mus musculus	Mouse	mm9	UCSC	2.6	0.3	1.1	0.5	1.2	41.8
Monodelphis domestica	Opossum	monDom4	UCSC	3.4	1.0	1.4	0.9	1.4	37.8
Monodelphis domestica	Opossum	monDom5	Broad	3.4	1.1	1.4	0.9	1.4	37.8
Ornithorhynchus anatinus	Platypus	ornAna1	UCSC	0.43	0.4	1.7	0.3	1.8	45.1
Oryzias latipes	Medeka	oryLat1	UCSC	0.58	0.4	2.1	0.3	2.2	40.5
Pan troglodytes	Chimpanzee	pantro2	UCSC	3.1	0.2	1.6	0.3	1.7	40.7
Macaca mulatta	Macaque	rheMac2	UCSC	2.7	0.3	1.8	0.3	2.1	40.6
Rattus norvegicus	Rat	rn4	UCSC	2.7	0.3	1.9	0.3	2.1	41.9
Tetraodon nigroviridis	Pufferfish	tetNig1	UCSC	0.2	0.3	1.7	0.3	1.7	45.8

*Genome downloaded from: UCSC, University of California Santa Cruz Genome Browser; HGSC, Human Genome Sequencing Center at Baylor College of Medicine; Broad, The Broad Institute; Ensembl, Ensembl genome database. ^†Genome size in gigabytes, without unassembled parts. IsoF, IsoFinder; GC-P, GC-Profile; L-S, least-squares.

ISSN: 1474-760X