From: CpG island density and its correlations with genomic features in mammalian genomes
Common name | Species name | Sequence build | Data source |
---|---|---|---|
Mammal | |||
Human | Homo sapiens | 35.1 | NCBI [44] |
Chimpanzee | Pan troglodytes | 2.1 | NCBI [44] |
Macaque | Macaca mulatta | 1.1 | NCBI [44] |
Mouse | Mus musculus | 34.1 | NCBI [44] |
Rat | Rattus norvegicus | 4.1 | NCBI [44] |
Dog | Canis familiaris | 2.1 | NCBI [44] |
Cow | Bos taurus | 3.1 | NCBI [44] |
Horse | Equus caballus | 1.1 | NCBI [44] |
Opossum | Monodelphis domestica | 2.1 | NCBI [44] |
Platypus* | Ornithorhynchus anatinus | 1.1 | NCBI [44] |
Non-mammal vertebrate | |||
Chicken† | Gallus gallus | 2.1 | NCBI [44] |
Green anole lizard‡ | Anolis carolinensis | anoCar1 | UCSC [30] |
Tetraodon | Tetraodon nigroviridis | tetNig1 | UCSC [30] |
Stickleback | Gasterosteus aculeatus | gasAcu1 | UCSC [30] |
Medaka | Oryzias latipes | oryLat1 | UCSC [30] |
Zebrafish | Danio rerio | danRer5 | UCSC [30] |
Fugu‡ | Takifugu rubripes | fr2 | UCSC [30] |