From: CpG island density and its correlations with genomic features in mammalian genomes
Algorithm | Genomic features | r | P | Shown in figure |
---|---|---|---|---|
TJ (9 genomes) | Chromosome pairs | 0.88 | 7.9 × 10-4 | 1a |
 | Log10(chromosome size) | -0.51 | 2.6 × 10-16 | 1b |
 | Chromosome GC content | 0.65 | 3.5 × 10-28 | 1c |
 | Chromosome ObsCpG/ExpCpG | 0.75 | 2.8 × 10-41 | 1d |
 | Chromosome arms | 0.62 | 0.037 |  |
 | Genome size | -0.53 | 0.073* |  |
 | Genomic GC content | 0.24 | 0.27* |  |
 | Genomic ObsCpG/ExpCpG | 0.63 | 0.035 |  |
TJ (9 genomes, intergenic CGIs) | Chromosome pairs | 0.79 | 0.005 | S2a |
 | Log10(chromosome size) | -0.55 | 7.3 × 10-19 | S2b |
 | Chromosome GC content | 0.39 | 8.6 × 10-10 | S2c |
 | Chromosome ObsCpG/ExpCpG | 0.67 | 3.7 × 10-30 | S2d |
TJ (10 genomes) | Chromosome pairs | 0.58 | 0.039 | S1a |
 | Log10(chromosome size) | -0.70 | 2.6 × 10-37 | S1b |
 | Chromosome GC content | 0.64 | 3.7 × 10-29 | S1c |
 | Chromosome ObsCpG/ExpCpG | 0.89 | 1.5 × 10-81 | S1d |
GF (9 genomes) | Chromosome pairs | 0.92 | 2.0 × 10-4 | S5a |
 | Log10(chromosome size) | -0.63 | 1.3 × 10-25 | S5b |
 | Chromosome GC content | 0.72 | 3.2 × 10-37 | S5c |
 | Chromosome ObsCpG/ExpCpG | 0.81 | 2.4 × 10-53 | S5d |
CpGcluster (9 genomes) | Chromosome pairs | 0.81 | 0.004 | S6a |
 | Log10(chromosome size) | -0.52 | 1.6 × 10-16 | S6b |
 | Chromosome GC content | 0.21 | 0.001 | S6c |
 | Chromosome ObsCpG/ExpCpG | 0.61 | 5.5 × 10-24 | S6d |