V-ATPase assembly/regulation (sn. 1)
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Rav1, Vma16, Vph1
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Proteasome (sn. 3)
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Cue1
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Bre5, Cdc26, Doa1, Hlj1, Sel1, Ubi4, Ubp6, Ump1
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Dia2
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Chromatin assembly/remodelling (sn. 4)
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SAGA complex (Ada2, Chd1, Gcn5, Hfi1, Ngg1, Spt7*, Spt20); Ino80 complex (Arp5, Arp8, Taf14); COMPASS complex (Bre2, Sdc1); Asf1, Ard1, Eaf7*, Esc2, Hda1*, Hmo1, Ioc2
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Hmo1
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Cell wall integrity pathway (sn. 5)
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Whi3
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Bem2, Dom34, Ecm33, Kcs1, Pin4, Pog1, Rvs161, Rvs167, Sic1, Sit4*, Sur7, Swi4, Swi6, Whi2
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CCR4 and other mRNA processing enzymes (sn. 6)
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Dhh1
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Paf1
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Nuclear pore complex (sn. 7)
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Nup84, Sac3, Thp1
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Essential ion homeostasis (sn. 9)
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Pho88
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Ccc2, Zap1
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Smf3
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Gef1, Pho89
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AP-3 complex (sn. 10)
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Apl5, Apl6, Apm3, Aps3
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General transcription (sn. 11)
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Mft1, Rpb9, Rtt103, Thp2
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Mediator complexes (Gal11, Med2, Pgd1, Spt21, Srb8*, Srb10); Cad1, Elp4, Tup1, Yap1
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Mss11
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DNA repair (sn. 12)
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Ctf4, Him1, Met18, Mms22, Mre11, Pol32, Rad6, Rad27, Xrs2
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Antioxidant defense (sn. 13)
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Atx2, Ccs1, Sod1, Sod2
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Cad1, Glr1, Gsh1, Gsh2, Yap1, Zwf1
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Hog1 pathway (sn. 14)
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Fps1, Hog1, Pbs2, Rck2, Ste11
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Gre2
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Vesicle targeting to, from or within Golgi (sn. 15)
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Erv41, Erv46, Get2, Sac1, Sec22, Sec66; Vps13; Cog5, Cog8; Pep7, Tlg2, Vps3, Vps9, Vps21, Vps45; Arl1, Arl3, Ent3, Gga2, Nhx1*, Rgp1, Ric1, Sys1, Yil039w*, Vps51, Vps54, Ypt6; Vam10*, Vps1*, Vps8*; Pep8*, Vps5*, Vps17*, Vps29*, Vps30*, Vps35*, Vps38*
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Apm2, Snx3*
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Ubiquitin-dependent sorting to the multivesicular body pathway (sn. 16)
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Vps27*; ESCRT I complex (Vps28*, Mvb12*, Srn2*, Stp22*); ESCRT II complex (Snf8*, Vps25*, Vps36*); ESCRT-III complex (Did4*, Snf7*, Vps20*, Vps24*); Bro1*, Did2*, Doa4*, Vps4*
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Bsd2*, Bul1*, Nhx1*, Tre1*
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