Table 2 Summary of GO analysis for D- and S-pair duplicates
From: Functional diversification of duplicate genes through subcellular adaptation of encoded proteins
| Â | D-pair | S-pair | Â | Â | ||
|---|---|---|---|---|---|---|
Biological process* | No. | Percentage | No. | Percentage | P-value†| Excess‡ |
Biosynthetic process | 32 | 21.1 | 111 | 42.9 | 0.0008 | 56 |
Catabolic process | 32 | 21.1 | 17 | 6.6 | 0.0024 | 22 |
Regulation of biological process | 59 | 38.8 | 56 | 21.6 | 0.0172 | 26 |
Response to biotic stimulus | 0 | 0.0 | 12 | 4.6 | 0.1480 | 12 |
Nitrogen compound metabolic process | 4 | 2.6 | 21 | 8.1 | 0.3988 | 14 |
Cell communication | 18 | 11.8 | 15 | 5.8 | 0.4587 | 9 |
Primary metabolic process | 110 | 72.4 | 210 | 81.1 | 0.5012 | 23 |
Cell cycle | 21 | 13.8 | 20 | 7.7 | 0.5012 | 9 |
Response to endogenous stimulus | 12 | 7.9 | 9 | 3.5 | 0.5012 | 7 |
Chemical homeostasis | 0 | 0.0 | 6 | 2.3 | 0.5012 | 6 |
Cellular developmental process | 11 | 7.2 | 9 | 3.5 | 0.5012 | 6 |
Chromosome segregation | 5 | 3.3 | 2 | 0.8 | 0.5012 | 4 |
Cell division | 21 | 13.8 | 25 | 9.7 | 0.6028 | 6 |
Response to stress | 24 | 15.8 | 29 | 11.2 | 0.6483 | 7 |
Reproductive process | 14 | 9.2 | 15 | 5.8 | 0.6696 | 5 |
Conjugation | 7 | 4.6 | 6 | 2.3 | 0.6982 | 3 |
Sexual reproduction | 7 | 4.6 | 6 | 2.3 | 0.6982 | 3 |
Aging | 1 | 0.7 | 6 | 2.3 | 0.7084 | 4 |
Cellular metabolic process | 120 | 79.0 | 214 | 82.6 | 0.7686 | 9 |
Asexual reproduction | 3 | 2.0 | 2 | 0.8 | 0.7686 | 2 |
Nuclear division | 1 | 0.7 | 0 | 0.0 | 0.7686 | 1 |
Protein localization | 10 | 6.6 | 23 | 8.9 | 0.7785 | 6 |
Cell adhesion | 0 | 0.0 | 2 | 0.8 | 0.7785 | 2 |
Response to chemical stimulus | 17 | 11.2 | 25 | 9.7 | 0.8583 | 2 |
RNA localization | 6 | 4.0 | 9 | 3.5 | 0.9959 | 1 |
Anatomical structure development | 12 | 7.9 | 19 | 7.3 | 1 | 1 |
Establishment of localization | 33 | 21.7 | 55 | 21.2 | 1 | 1 |
Macromolecule metabolic process | 98 | 64.5 | 169 | 65.3 | 1 | 2 |
Response to external stimulus | 0 | 0.0 | 1 | 0.4 | 1 | 1 |
Maintenance of localization | 1 | 0.7 | 1 | 0.4 | 1 | 0 |
Response to abiotic stimulus | 4 | 2.6 | 7 | 2.7 | 1 | 0 |
Cell organization and biogenesis | 57 | 37.5 | 97 | 37.5 | 1 | 0 |
Regulation of biological quality | 8 | 5.3 | 14 | 5.4 | 1 | 0 |
Autophagy | 0 | 0.0 | 1 | 0.4 | 1 | 1 |
Filamentous growth | 8 | 5.3 | 13 | 5.0 | 1 | 0 |
Cell homeostasis | 7 | 4.6 | 12 | 4.6 | 1 | 0 |
Regulation of a molecular function | 1 | 0.7 | 3 | 1.2 | 1 | 1 |
Cell proliferation | 0 | 0.0 | 1 | 0.4 | 1 | 1 |
Non-developmental growth | 1 | 0.7 | 2 | 0.8 | 1 | 0 |