Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

Table 5 Distribution of OMAP non-redundant SSRs by motif type

			Non-redundant
			Di		Tri		Tetra		Penta		Hexa		Total
Species	Ploidy	Total no. of SSRs containing BESs (%)	No.	%	No.	%	No.	%	No.	%	No.	%	No.	SSR density (no. of SSRs/Mb)
O. sativa spp japonica	2	-	8,636	41.81	6,259	30.31	2,439	11.81	2,628	12.72	691	3.35	20,653	55.8
O. sativa spp indica	2	-	8,317	42.94	6,059	31.28	2,285	11.80	2,142	11.06	567	2.93	19,370	47.2
O. nivara	2	2,129 (2.01)	739	46.33	451	28.28	189	11.85	170	10.66	46	2.88	1,595	22.5
O. rufipogon	2	1,599 (2.25)	696	49.40	375	26.61	169	11.99	137	9.72	32	2.27	1,409	28.2
O. glaberrima	2	1,289 (1.93)	518	45.00	319	27.72	124	10.77	153	13.29	37	3.21	1,151	29.5
O. punctata	2	1,043 (1.53)	408	44.54	268	29.26	105	11.46	100	10.92	35	3.82	916	18.7
O. officinalis	2	1,397 (1.35)	545	47.43	308	26.81	111	9.66	146	12.71	39	3.39	1,149	16.0
O. australiensis	2	1,306 (0.96)	597	54.17	230	20.87	94	8.53	128	11.62	53	4.81	1,102	13.0
O. brachyantha	2	1,630 (2.42)	590	48.68	287	23.68	135	11.14	166	13.70	34	2.81	1,212	26.9
O. granulata	2	1,174 (0.85)	603	55.99	313	29.06	64	5.94	73	6.78	24	2.23	1,077	11.6
O. minuta	4	1,939 (1.14)	921	54.27	386	22.75	176	10.37	168	9.90	46	2.71	1,697	17.9
O. alta	4	1,582 (1.23)	812	52.83	363	23.62	182	11.84	141	9.17	39	2.54	1,537	20.5
O. ridleyi	4	2,305 (1.13)	709	35.36	741	36.96	238	11.87	257	12.82	60	2.99	2,005	15.5
O. coarctata	4	2,671 (1.37)	1,108	52.02	500	23.47	257	12.07	198	9.30	67	3.15	2,130	16.5
OMAP total		20,064 (1.38)	8,246	48.56	4,541	26.74	1,844	10.86	1,837	10.82	512	3.02	16,980	18.2

ISSN: 1474-760X