Table 4 Repeat content analysis of 12 Oryza species using RepeatMasker and RECON
| Â | Â | Repeat content by RECON | Â | ||
|---|---|---|---|---|---|
Species | Repeat content by RepeatMasker | Total | Overlap with RepeatMasker (% of total) | Uniqe (% of total) | Total repeat content |
O. sativa (Nipponbare) | 29.4% | 37.2% | 23.8% (64%) | 13.4% (36%) | 42.8% |
O. nivara | 37.0% | 47.6% | 29.5% (62%) | 18.1% (38%) | 55.1% |
O. rufipogon | 36.6% | 49.7% | 34.6% (70%) | 15.2% (30%) | 51.7% |
O. glaberrima | 28.5% | 30.9% | 19.8% (64%) | 11.2% (36%) | 39.7% |
O. punctata | 40.8% | 41.4% | 30.7% (74%) | 10.7% (26%) | 51.5% |
O. officinalis | 47.2% | 56.5% | 37.6% (67%) | 18.9% (33%) | 66.1% |
O. minuta | 44.0% | 46.3% | 32.2% (70%) | 14.1% (30%) | 58.1% |
O. alta | 43.2% | 47.9% | 33.2% (69%) | 14.7% (31%) | 57.9% |
O. australiensis | 55.0% | 66.4% | 45.4% (68%) | 21.0% (32%) | 76.0% |
O. brachyantha | 20.9% | 27.5% | 11.6% (42%) | 15.9% (58%) | 36.8% |
O. granulata | 30.1% | 30.9% | 20.5% (66%) | 10.4% (34%) | 40.5% |
O. ridleyi | 35.6% | 42.7% | 23.0% (54%) | 19.7% (46%) | 55.2% |
O. coarctata | 19.7% | 24.5% | 7.7% (32%) | 16.7% (68%) | 36.4% |