Table 3 Summary of alignments of 12 OMAP Phase I FPC maps to the O. sativa RefSeq
| Â | Â | Â | Â | Â | Â | Â | Â | Not aligned contig | |
|---|---|---|---|---|---|---|---|---|---|
Species | No. of contigs aligned | Total CB aligned | Total size aligned* (Mb) | No. of clones in aligned contig | No. of BESs aligned | Average identity of BES alignments | E-value of BES alignments | CB/contig (average) | No. of clones/contig (average) |
O. nivara | 368 (81%) | 371,561 (97%) | 490 (109%) | 48,424 (99%) | 63,293 (60%) | 97% | e-237 to e-33 | 150 | 3 |
O. rufipogon | 581 (91%) | 399,346 (98%) | 503 (115%) | 31,398 (99%) | 36,725 (52%) | 97% | e-224 to e-57 | 133 | 6 |
O. glaberrima | 860 (95%) | 302,696 (98%) | 378 (106%) | 30,708 (99%) | 33,356 (50%) | 97% | e-213 to e-42 | 157 | 6 |
O. punctata | 462 (94%) | 332,224 (98%) | 402 (95%) | 31,674 (97%) | 25,842 (38%) | 93% | e-183 to e-30 | 286 | 38 |
O. officinalis | 617 (88%) | 448,477 (97%) | 547 (84%) | 44,194 (99%) | 25,699 (25%) | 93% | e-204 to e-16 | 159 | 6 |
O. minuta | 3,073 (78%) | 833,710 (83%) | 1,075 (96%) | 66,277 (86%) | 46,227 (27%) | 93% | e-173 to e-07 | 192 | 12 |
O. alta | 1,571 (63%) | 671,625 (77%) | 819 (81%) | 50,281 (83%) | 10,770 (8%) | 93% | e-193 to e-02 | 216 | 11 |
O. australiensis | 787 (78%) | 630,836 (91%) | 770 (80%) | 60,538 (94%) | 20,429 (15%) | 93% | e-182 to e-03 | 279 | 17 |
O. brachyantha | 351 (83%) | 205,608 (96%) | 267 (74%) | 30,717 (99%) | 25,387 (38%) | 91% | e-175 to e-18 | 135 | 5 |
O. granulata | 1,444 (61%) | 814,383 (76%) | 904 (102%) | 50,117 (81%) | 18,785 (14%) | 91% | e-179 to e-05 | 289 | 13 |
O. ridleyi | 1,756 (80%) | 1,123,902 (92%) | 1,281 (100%) | 94,565 (95%) | 37,300 (18%) | 92% | e-170 to e-06 | 213 | 11 |
O. coarctata | 1,002 (80%) | 579,809 (95%) | 713 (92%) | 89,775 (99%) | 53,920 (28%) | 92% | e-184 to e-07 | 130 | 4 |