Species | Average insert size | No. of total attempted | No. of clones FPCed | Genome coverage by all FPCed clones | Success ratio | Total organellar contam + no. inserts containing clones* | No. of FPC clones with paired BES reads | No. of singletons (%) | No. of contigs | Total CB units | Average no. of bands/clone | Deduced size of 1 CB unit†(kb) | Deduced genome size (Mb)‡ (coverage) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
O. nivara | 161 | 55,296 | 51,056 | 18 | 92% | 4.1% | 48,032 (94%) | 2,356 (4.6%) | 456 | 384,733 | 121.6 | 1.32 | 509 (114%) |
O. rufipogon | 134 | 35,712 | 33,023 | 10 | 92% | 3.9% | 31,202 (94%) | 1,305 (4.0%) | 637 | 406,768 | 106.2 | 1.26 | 513 (117%) |
O. glaberrima | 130 | 36,864 | 33,065 | 12 | 90% | 3.7% | 27,661 (84%) | 2,098 (6.3%) | 905 | 309,740 | 103.9 | 1.25 | 388 (109%) |
O. punctata | 142 | 36,864 | 34,224 | 11 | 93% | 1.8% | 30,228 (88%) | 1,482 (4.3%) | 490 | 340,240 | 117.4 | 1.21 | 412 (97%) |
O. officinalis | 141 | 54,144 | 45,856 | 10 | 85% | 6.7% | 40,549 (88%) | 1,133 (2.5%) | 703 | 462,126 | 115.5 | 1.22 | 564 (87%) |
O. minuta | 125 | 92,160 | 86,861 | 10 | 94% | 1.2% | 77,999 (90%) | 9,576 (11.0%) | 3,962 | 1,004,697 | 96.6 | 1.29 | 1,300 (116%) |
O. alta | 133 | 73,728 | 63,860 | 8 | 87% | 0.4% | 50,842 (80%) | 3,111 (4.9%) | 2,492 | 870,411 | 109.3 | 1.22 | 1,059 (105%) |
O. australiensis | 152 | 73,728 | 67,416 | 11 | 91% | 2.7% | 58,992 (88%) | 3,144 (4.7%) | 1,003 | 691,155 | 125.1 | 1.22 | 840 (87%) |
O. brachyantha | 131 | 36,864 | 33,424 | 12 | 91% | 1.7% | 29,523 (88%) | 2,354 (7.0%) | 422 | 215,208 | 100.9 | 1.30 | 279 (77%) |
O. granulata | 134 | 73,728 | 64,836 | 10 | 88% | 3.4% | 58,818 (91%) | 3,032 (4.7%) | 2,358 | 1,078,237 | 120.8 | 1.11 | 1,196 (136%) |
O. ridleyi | 127 | 110,592 | 104,393 | 10 | 94% | 2.1% | 93,192 (89%) | 5,169 (5.0%) | 2,190 | 1,216,461 | 111.2 | 1.14 | 1,389 (108%) |
O. coarctata | 123 | 100,224 | 92,522 | 15 | 92% | 2.1% | 82,180 (89%) | 1,810 (2.0%) | 1,250 | 611,953 | 100.0 | 1.23 | 753 (98%) |
Total/Average | 136 | 779,904 | 710,536 | 11 | 91% | 2.8% | 629,218 (89%) | 5.1% | Â | Â | 110.7 | 1.23 | Â |