Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

Table 1 Summary of BAC end sequences of 12 Oryza species

Species	Genome type	Genome size (Mb)*	No. of GenBank submissions	Average length after trim (in GenBank)	Total sequenced length (in GenBank)	Genome coverage	No. of forward reads	No. of reverse reads	No. of clones with paired reads (% of total BES)
O. nivara	AA	448	106,124	665 bp	~ 71 Mb	16%	53,450	52,674	51,820 (98%)
O. rufipogon	AA	439	70,982	704 bp	~ 50 Mb	11%	35,473	35,509	34,747 (98%)
O. glaberrima	AA	357	66,821	590 bp	~ 39 Mb	11%	33,456	33,365	30,885 (92%)
O. punctata	BB	425	68,384	710 bp	~ 49 Mb	11%	35,051	33,333	32,284 (94%)
O. officinalis	CC	651	101,091	717 bp	~ 72 Mb	11%	49,972	49,052	47,197 (93%)
O. minuta	BBCC	1,124	169,460	559 bp	~ 95 Mb	8%	85,466	83,994	82,248 (97%)
O. alta	CCDD	1,008	128,732	586 bp	~ 75 Mb	7%	64,365	64,367	58,217 (90%)
O. australiensis	EE	965	135,769	625 bp	~ 85 Mb	9%	67,245	68,524	64,081 (94%)
O. brachyantha	FF	362	67,364	672 bp	~ 45 Mb	13%	34,009	33,355	32,258 (96%)
O. granulata	GG	882	138,171	674 bp	~ 93 Mb	11%	69,962	68,209	66,434 (96%)
O. ridleyi	HHJJ	1,283	204,729	632 bp	~ 129 Mb	10%	102,640	102,089	98,160 (96%)
O. coarctata	HHKK	771^†	195,285	661 bp	~ 129 Mb	17%	100,341	94,944	91,853 (94%)
Total/Average			1,452,912	650 bp	~ 932 Mb	11%	731,430	719,415	690,184 (95%)

*From [30]. ^†By K Arumuganathan using flow cytometric methods as previously described [30].

ISSN: 1474-760X