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Table 2 Classification of strain-variableORFs into species sets and phylogroups

From: Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction

Species profile Phylogroup
  ROW* RO R8 R7 Total
Set 1: all species      
   1, 2, 3, 4, 5, 6, 7 29 15 30 1 75
Total 29 15 30 1 75
Set 2: TG + SFG      
   1, 2 0 0 1 3 4
   1, 2, 3 1 0 2 0 3
   1, 2, 3, 4, 5 0 0 1 0 1
   1, 2, 3, 4, 6 0 0 1 0 1
   1, 2, 3, 4, 5, 6 0 0 1 0 1
   1, 2, 3, 4, 5, 7 3 0 1 0 4
   1, 2, 3, 5, 6, 7 0 1 1 0 2
   1, 2, 3, 6, 7 0 0 1 0 1
   1, 2, 4 0 1 0 0 1
   1, 2, 4, 5, 6 0 0 1 0 1
   1, 2, 4, 5, 6, 7 0 0 2 0 2
   1, 3, 4, 5, 6, 7 4 1 1 0 6
   1, 3, 5, 6, 7 0 0 1 0 1
   1, 4, 5, 6, 7 0 0 1 0 1
   2, 3, 4, 5, 6, 7 0 1 0 0 1
   2, 3, 5, 6, 7 0 0 1 0 1
   Total 8 4 16 3 31
Set 3: SFG only      
   3, 4 2 4 19 3 28
   3, 4, 5 0 0 3 0 3
   3, 4, 5, 6, 7 16 6 53 1 76
   3, 4, 5, 6 0 0 6 0 6
   3, 4, 6 0 0 1 0 1
   3, 4, 6, 7 0 0 1 0 1
   3, 4, 7 0 0 1 0 1
   3, 5 0 1 5 0 6
   3, 5, 6 0 0 4 1 5
   3, 5, 6, 7 4 2 17 2 25
   3, 5, 7 0 0 3 0 3
   3, 6 0 1 3 0 4
   3, 6, 7 0 0 1 0 1
   3, 7 0 0 2 2 4
   4, 5 0 0 1 0 1
   4, 5, 6 1 0 0 0 1
   4, 5, 6, 7 1 1 3 0 5
   5, 6 0 0 9 1 10
   5, 6, 7 5 0 16 5 26
   5, 7 0 0 3 2 5
   6, 7 0 0 1 2 3
   Total 29 15 152 19 215
Set 4: single species      
   1 1 4 2 2 9
   3 21 5 69 20 115
   4 1 0 11 1 13
   5 0 0 3 1 4
   6 0 0 2 1 3
   7 0 1 3 0 4
   Total 23 10 90 25 148
Grand total 89 44 288 48 469
  1. Number abbreviations for species are as follows: 1, R. prowazekii; 2, R. typhi; 3, R. felis; 4, R. akari; 5, R. conorii; 6, R. sibirica; and 7, R. rickettsii. The phylogroup ROW* is a summary of ROW, RW, W, and OW. ORF, open reading frame; SFG, spotted fever group; TG, typhus group.