Table 2 Classification of strain-variableORFs into species sets and phylogroups
Species profile | Phylogroup | ||||
|---|---|---|---|---|---|
| Â | ROW* | RO | R8 | R7 | Total |
Set 1: all species | Â | Â | Â | Â | Â |
   1, 2, 3, 4, 5, 6, 7 | 29 | 15 | 30 | 1 | 75 |
Total | 29 | 15 | 30 | 1 | 75 |
Set 2: TG + SFG | Â | Â | Â | Â | Â |
   1, 2 | 0 | 0 | 1 | 3 | 4 |
   1, 2, 3 | 1 | 0 | 2 | 0 | 3 |
   1, 2, 3, 4, 5 | 0 | 0 | 1 | 0 | 1 |
   1, 2, 3, 4, 6 | 0 | 0 | 1 | 0 | 1 |
   1, 2, 3, 4, 5, 6 | 0 | 0 | 1 | 0 | 1 |
   1, 2, 3, 4, 5, 7 | 3 | 0 | 1 | 0 | 4 |
   1, 2, 3, 5, 6, 7 | 0 | 1 | 1 | 0 | 2 |
   1, 2, 3, 6, 7 | 0 | 0 | 1 | 0 | 1 |
   1, 2, 4 | 0 | 1 | 0 | 0 | 1 |
   1, 2, 4, 5, 6 | 0 | 0 | 1 | 0 | 1 |
   1, 2, 4, 5, 6, 7 | 0 | 0 | 2 | 0 | 2 |
   1, 3, 4, 5, 6, 7 | 4 | 1 | 1 | 0 | 6 |
   1, 3, 5, 6, 7 | 0 | 0 | 1 | 0 | 1 |
   1, 4, 5, 6, 7 | 0 | 0 | 1 | 0 | 1 |
   2, 3, 4, 5, 6, 7 | 0 | 1 | 0 | 0 | 1 |
   2, 3, 5, 6, 7 | 0 | 0 | 1 | 0 | 1 |
   Total | 8 | 4 | 16 | 3 | 31 |
Set 3: SFG only | Â | Â | Â | Â | Â |
   3, 4 | 2 | 4 | 19 | 3 | 28 |
   3, 4, 5 | 0 | 0 | 3 | 0 | 3 |
   3, 4, 5, 6, 7 | 16 | 6 | 53 | 1 | 76 |
   3, 4, 5, 6 | 0 | 0 | 6 | 0 | 6 |
   3, 4, 6 | 0 | 0 | 1 | 0 | 1 |
   3, 4, 6, 7 | 0 | 0 | 1 | 0 | 1 |
   3, 4, 7 | 0 | 0 | 1 | 0 | 1 |
   3, 5 | 0 | 1 | 5 | 0 | 6 |
   3, 5, 6 | 0 | 0 | 4 | 1 | 5 |
   3, 5, 6, 7 | 4 | 2 | 17 | 2 | 25 |
   3, 5, 7 | 0 | 0 | 3 | 0 | 3 |
   3, 6 | 0 | 1 | 3 | 0 | 4 |
   3, 6, 7 | 0 | 0 | 1 | 0 | 1 |
   3, 7 | 0 | 0 | 2 | 2 | 4 |
   4, 5 | 0 | 0 | 1 | 0 | 1 |
   4, 5, 6 | 1 | 0 | 0 | 0 | 1 |
   4, 5, 6, 7 | 1 | 1 | 3 | 0 | 5 |
   5, 6 | 0 | 0 | 9 | 1 | 10 |
   5, 6, 7 | 5 | 0 | 16 | 5 | 26 |
   5, 7 | 0 | 0 | 3 | 2 | 5 |
   6, 7 | 0 | 0 | 1 | 2 | 3 |
   Total | 29 | 15 | 152 | 19 | 215 |
Set 4: single species | Â | Â | Â | Â | Â |
   1 | 1 | 4 | 2 | 2 | 9 |
   3 | 21 | 5 | 69 | 20 | 115 |
   4 | 1 | 0 | 11 | 1 | 13 |
   5 | 0 | 0 | 3 | 1 | 4 |
   6 | 0 | 0 | 2 | 1 | 3 |
   7 | 0 | 1 | 3 | 0 | 4 |
   Total | 23 | 10 | 90 | 25 | 148 |
Grand total | 89 | 44 | 288 | 48 | 469 |