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Table 5 Positional weight matrix for HNF4α sites (TRANSFAC® accession number M01031, identifier V$HNF4_Q6_01)

From: Genome wide prediction of HNF4α functional binding sites by the use of local and global sequence context

A

19

5

11

5

2

52

46

49

0

3

3

1

46

17

C

8

2

3

16

48

1

2

0

0

1

19

47

2

15

G

21

46

30

20

2

0

10

9

58

26

7

2

6

14

T

10

5

14

17

6

5

0

0

0

28

29

8

4

12

Consensus*

N

G

G

N

C

A

A

A

G

K

Y

C

A

N

  1. *Two 'half-matrices' (M01032, V$HNF4_Q6_02; and M01033, V$HNF4_Q6_03) corresponding to the DR1 repeat are shown in bold and refer to the frequency of a nucleotide of the matrix.
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Genome Biology

ISSN: 1474-760X

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