Gene sets in ChIP-chip experiment | HNF4 targets identified by PWM V$HNF4_Q6_1 (cut-off = 0.9) | HNF4 targets identified by local + global context | ||
---|---|---|---|---|
Positive* | Negative† | |||
Gupta et al. [44] Up + Dn (133) | 13 (9.8%) | ND | 66 (49.6%) | 41 (30.8%) |
Naiki et al. [7] Up + Dn (75)‡ | 17 (22.7%) | 32 (42.7%) | 15 (20%) | 14 (18.7%) |
Lucas et al. [9] Up + Dn (70)‡ | 13 (18.6%) | 39 (55.7%) | 17 (24.3%) | 13 (18.6%) |
Lucas et al. [9] NC (150)‡ | 20 (13.3%) | 99 (66%) | 29 (19.3%) | 4 (2.7%) |