Table 2 Efficiency of document recovery, sequence extraction and genome mapping for the source lists of PMIDs with high cis-regulatory content
| Â | TRANSFAC | FlyReg | ORegAnno | Queue | top4,501 | All |
|---|---|---|---|---|---|---|
Number of PMIDs | 5,719 | 202 | 914 | 4,145 | 4,491 | 11,437 |
Number of PMIDs with PDF | 5,302 | 187 | 835 | 3,710 | 3,677 | 9,940 |
Percent PMIDs with PDF | 92.7% | 92.6% | 91.4% | 89.5% | 81.9% | 86.9% |
Number of PMIDs with text >2 Kbytes | 5,051 | 175 | 793 | 3,517 | 3,498 | 9,440 |
Percent PMIDs with text >2 Kbytes | 88.3% | 86.6% | 86.8% | 84.8% | 77.9% | 82.5% |
Efficiency of text conversion | 95.3% | 93.6% | 95.0% | 94.8% | 95.1% | 95.0% |
Number of PMIDs with fasta sequence | 4,357 | 155 | 660 | 3,044 | 3,080 | 8,066 |
Percent PMIDs with fasta sequence | 76.2% | 76.7% | 72.2% | 73.4% | 68.6% | 70.5% |
Efficiency of sequence extraction | 86.3% | 88.6% | 83.2% | 86.6% | 88.1% | 85.4% |
Number of PMIDs with fasta sequence mapped to genome | 1,518 | 75 | 303 | 1,279 | 1,260 | 2,975 |
Percent PMIDs with fasta sequence mapped to genome | 26.5% | 37.1% | 33.2% | 30.9% | 28.1% | 26.0% |
Efficiency of genome mapping | 34.8% | 48.4% | 45.9% | 42.0% | 40.9% | 36.9% |