Table 1 Coverage of validation sets (excluding PMIDs in the training set) within the top10k, top50k, and top100k ranked abstracts for the vector space model relevancy ranking
| Â | TRANSFAC | FlyReg | ORegAnno Queue | ORegAnno prior to RegCreative | RegCreative success | RegCreative failure |
|---|---|---|---|---|---|---|
Number of PMIDs | 5,719 | 200 | 4,145 | 376 | 260 | 218 |
Number of PMIDs (no training data) | 5,183 | 186 | 3,687 | 340 | 228 | 212 |
Number in top10k | 1,390 | 38 | 1,035 | 89 | 59 | 18 |
Percent in top10k | 26.8% | 20.4% | 28.1% | 26.2% | 25.9% | 8.5% |
Number in top50k | 3,908 | 146 | 2,753 | 260 | 165 | 79 |
Percent in top50k | 75.4% | 78.5% | 74.7% | 76.5% | 72.4% | 37.3% |
Number in top100k | 4,572 | 166 | 3,208 | 301 | 199 | 110 |
Percent in top100k | 88.2% | 89.2% | 87.0% | 88.5% | 87.3% | 51.9% |