From: Do Alu repeats drive the evolution of the primate transcriptome?
Biological process | Gene number | Breadth | Alu | ||
---|---|---|---|---|---|
 |  | Mean | SD | Mean | SD |
Protein biosynthesis | 255 | 37.2 | 24.11 | 0.2833 | 0.1932 |
Ubiquitin-dependent protein catabolism | 111 | 35.45 | 23.57 | 0.2462 | 0.1707 |
Intracellular protein transport | 207 | 33.45 | 22.93 | 0.2602 | 0.2001 |
Nuclear mRNA splicing, via spliceosome | 163 | 31.56 | 22.56 | 0.3004 | 0.2186 |
Protein folding | 201 | 31.33 | 22.5 | 0.2597 | 0.1716 |
Protein transport | 193 | 30.72 | 23.46 | 0.2759 | 0.1749 |
Ubiquitin cycle | 270 | 28.21 | 23.77 | 0.2683 | 0.1826 |
Protein amino acid dephosphorylation | 154 | 26.96 | 20.75 | 0.2186 | 0.1792 |
Protein modification | 104 | 26.53 | 21.2 | 0.2425 | 0.1772 |
Regulation of progression through cell cycle | 185 | 26.5 | 22.25 | 0.248 | 0.2014 |
Cell cycle | 186 | 26.32 | 21.2 | 0.2248 | 0.1852 |
Protein complex assembly | 108 | 26.23 | 22.33 | 0.2513 | 0.1806 |
Cell motility | 105 | 26.1 | 20.57 | 0.2217 | 0.1976 |
Transcription | 101 | 26.01 | 23.31 | 0.2417 | 0.1906 |
Electron transport | 317 | 25.87 | 22.7 | 0.198 | 0.1703 |
Negative regulation of cell proliferation | 122 | 25.57 | 22.99 | 0.205 | 0.1657 |
Small GTPase mediated signal transduction | 194 | 25.47 | 21.47 | 0.2251 | 0.1775 |
Intracellular signaling cascade | 406 | 25.1 | 21.65 | 0.2108 | 0.1811 |
Metabolism | 440 | 24.68 | 20.43 | 0.1916 | 0.1681 |
Carbohydrate metabolism | 191 | 24.48 | 21.51 | 0.2164 | 0.1956 |
Apoptosis | 260 | 24.03 | 20.43 | 0.218 | 0.1906 |
Cytokinesis | 111 | 23.94 | 21.26 | 0.2082 | 0.1773 |
Regulation of transcription from RNA polymerase II promoter | 150 | 23.59 | 21.86 | 0.2332 | 0.1938 |
DNA repair | 132 | 23.58 | 21.06 | 0.2478 | 0.179 |
Cell proliferation | 223 | 23.26 | 20.79 | 0.1974 | 0.1847 |
Protein amino acid phosphorylation | 611 | 23.21 | 20.35 | 0.2391 | 0.1881 |
Protein ubiquitination | 346 | 22.39 | 21.55 | 0.2305 | 0.1772 |
Transport | 580 | 22.07 | 20.49 | 0.2184 | 0.1862 |
Transcription from RNA polymerase II promoter | 171 | 21.85 | 22.01 | 0.2131 | 0.192 |
Signal transduction | 896 | 21.81 | 20.21 | 0.1882 | 0.1702 |
Lipid metabolism | 156 | 21.24 | 20.66 | 0.1978 | 0.1732 |
Cell surface receptor linked signal transduction | 126 | 21.16 | 20.82 | 0.1821 | 0.1603 |
DNA replication | 103 | 21.08 | 21.71 | 0.2377 | 0.1818 |
Immune response | 266 | 20.72 | 18.79 | 0.1748 | 0.1743 |
Cell adhesion | 439 | 20.23 | 18.16 | 0.1377 | 0.1425 |
Inflammatory response | 174 | 20.22 | 19.76 | 0.1585 | 0.1693 |
Proteolysis | 474 | 19.38 | 19.72 | 0.1984 | 0.1739 |
Nervous system development | 242 | 19.32 | 19.21 | 0.1575 | 0.1769 |
Sensory perception of smell | 132 | 19.21 | 18.16 | 0.1 | 0.1211 |
Regulation of transcription, DNA dependent | 1681 | 18.42 | 20.2 | 0.2021 | 0.1877 |
Homophilic cell adhesion | 117 | 17.56 | 18.49 | 0.1042 | 0.1238 |
Chemotaxis | 105 | 17.15 | 16.11 | 0.1682 | 0.162 |
Development | 474 | 17.05 | 18.67 | 0.1488 | 0.1737 |
Muscle development | 127 | 16.9 | 17.06 | 0.1809 | 0.1695 |
Spermatogenesis | 107 | 16.5 | 18.73 | 0.1925 | 0.1767 |
G-protein-coupled receptor protein signaling pathway | 547 | 16.49 | 18.41 | 0.1388 | 0.1478 |
Ion transport | 231 | 16.26 | 17.18 | 0.1437 | 0.1471 |
Synaptic transmission | 190 | 15.84 | 16.34 | 0.1394 | 0.1516 |
Visual perception | 168 | 15.82 | 19.07 | 0.1663 | 0.159 |
Cell-cell signaling | 269 | 15.05 | 17.83 | 0.1546 | 0.1559 |
Phosphate transport | 104 | 14.34 | 15.81 | 0.1395 | 0.1712 |
Potassium ion transport | 168 | 14.27 | 16.54 | 0.1306 | 0.1533 |
Cation transport | 185 | 13.17 | 17.41 | 0.1506 | 0.1541 |