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Table 1 Nucleotidic overlap of RNA-Seq reads, G-Mo.R-Se covtigs and G-Mo.R-Se models with different genomic compartments relative to the reference annotation

From: Annotating genomes with massive-scale RNA sequencing

  Genomic compartment relative to the reference annotation (%)
  Exonic: 41,603,635 nucleotides Intronic: 184,047,761 nucleotides Intergenic: 271,857,375 nucleotides
  Specificity Sensitivity Specificity Sensitivity Specificity Sensitivity
Reads: 73,580,625 nucleotides 37 66 40 16 23 6
Covtigs: 38,484,212 nucleotides 60 56 20 4 20 3
Models: 22,213,316 nucleotides 80 43 5 1 15 1
  1. Specificity reflects the percentage of nucleotides in reads/covtigs/models falling in the compartment; sensitivity reflects the percentage of nucleotides in the genomic compartment overlapped by reads/covtigs/models.