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Table 4 RefSeq genes flanking the ENCs

From: Evolutionary-new centromeres preferentially emerge within gene deserts

ENC

Interval (Mb)

Left gene

Position in HSA (hg17) or MMU (rheMac2)

Right gene

Position in HSA (hg17) or MMU (rheMac2)

Platirrhini

     

LLA7 (HSA8)

0.534

ASPH

Chr8:62,699,652-62,789,681

FAM77D

Chr8:63,324,055-64,074,765

Catarrhini

     

MMU2 (HSA3)

3.607

C3orf57

Chr3:162,545,283-162,572,573

SI

Chr3:166,179,388-166,278,984

MMU4 (HSA6)

0.772

UTRN

Chr6:144,654,566-145,215,861

EPM2A

Chr6:145,988,141-146,098,684

MMU13 (HSA2p)

0.097

RNF103

Chr2:86,742,174-86,762,636

RMD5A

Chr2:86,859,351-86,914,090

MMU14 (HSA11)

1.213

MMP26

Chr11:4,966,000-4,970,233

C11orf42

Chr11:6,183,374-6,188,935

MMU15 (HSA9)

0.423

PTGS1

Chr9:122,212,783-122,237,535

PDCL

Chr9:122,660,178-122,670,394

MMU12 (HSA2q)

0.485

HNMT

Chr2:138,555,540-138,607,665

LOC339745

Chr2:139,093,103-139,164,532

MMU17 (HSA13)

4.888

PCDH20

Chr13:60,881,822-60,887,282

PCDH9

Chr13:65,774,968-66,702,464

MMU18 (HSA18)

0.247

C18orf54

Chr18:50,139,169-50,162,379

C18orf26

Chr18:50,409,388-50,417,722

NLE14 (HSA11)

2.746

CHORDC1

Chr11:89,574,265-89,595,854

MTNR1B

Chr11:92,342,437-92,355,596

PPY11 (HSA11)

0.203

DBX1

Chr11:20,134,336-20,138,446

HTATIP2

Chr11:20,341,924-20,361,904

HSA

     

HSA3 (MMU2)

0.641

EPHA3 in HSA (not annotated in

Chr3:89,239,364-89,613,972

PROS1 (L31380 in MMU)

Chr3:95,074,647-95,175,395

  

MMU)

(MMU2:13,335,593-13,694,578)

 

(Chr2:14,335,824-14,391,596)

HSA6 (MMU4)

0.897

PRIM2A in HAS (not annotated in

Chr6:57,290,381-57,621,334

KHDRBS2 in HAS (not annotated in

Chr6:62,447,824-63,054,091

  

MMU)

(2 dup in MMU:

MMU)

(3 dup in MMU:

   

MMU4:56,935,673-57,245,600

 

Chr4:58,142,819-58,698,705

   

MMU11:20,043,342-20,044,345)

 

Chr17:3,473,312-3,473,395

     

Chr8:138,072,498-138,196,040)

HSA11 (MMU14)

1.280

LRRC55 in HAS (not annotated in

Chr11:56,705,797-56,714,154

PTPRJ in HAS (not annotated in MMU)

Chr11:47,958,689-48,146,246

  

MMU)

(MMU14:16,226,175-16,234,557)

 

(Chr14:23,931,871-24,124,487)

  1. Position of the most proximal and distal genes with respect to each ENC seeding region, calculated in the reference genome (see text). The interval size, in Mb, between the two genes is reported in column 2.