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Table 1 Definition of the ENC seeding region in the reference genome

From: Evolutionary-new centromeres preferentially emerge within gene deserts

Chromosome

ENC position

Size (kb)

p arm BAC

Position in HSA (hg17) or MMU (rheMac2)

q arm BAC

Position in HSA (hg17) or MMU (rheMac2)

AT content (%)

Platirrhini

       

LLA7 (HSA8)

Chr8:63,002,317-63,047,396

45

RP11-953L16

Chr8:62,816,386-63,002,317

RP11-159F22

Chr8:63,047,396-63,204,407

63.9

Catarrhini

       

MMU2 (HSA3)

Chr3:164,221,008-164,539,729

319

RP11-449O23

Chr3:164,054,860-164,221,008

RP11-418B12

Chr3:164,539,729-164,707,135

65.9

MMU4 (HSA6)

Chr6:145,651,644-145,845,896

194

RP11-474A9

Chr6:145,651,644-145,845,896

  

63.2

MMU12 (HSA2q)

Chr2:138,847,788-138,947,383

99

RP11-343I5

Chr2:138,777,146-138,947,383

RP11-846E22

Chr2:138,847,788-139,025,935

63.1

MMU13 (HSA2p)

Chr2:86,680,785-86,885,407

204

RP11-722G17

Chr2:86,680,785-86,885,407

  

60.0

MMU14 (HSA11)

Chr11:5,856,181-5,864,725

8

RP11-625D10

Chr11:5,667,339-5,864,725

RP11-661M13

Chr11:5,856,181-6,043,020

62.8

MMU15 (HSA9)

Chr9:122,486,836-122,532,865

46

RP11-64P14

Chr9:122,344,545-122,532,865

RP11-1069J21

Chr9:122,486,836-122,680,563

62.4

MMU17 (HSA13)

Chr13:61,178,154-62,520,878

1,343

RP11-543A19

Chr13:61,111,769-61,178,154

RP11-527N12

Chr13:62,520,878-62,699,203

66.2

MMU18 (HSA18)

Chr18:50,313,129-50,360,135

47

RP11-61D1

Chr18:50,155,761-50,313,129

RP11-289E15

Chr18:50,360,135-50,526,341

gap

NLE15 (HSA11)

Chr11:89,446,995-89,488,776

42

RP11-529A4

Chr11:89,286,313-89,446,995

RP11-1129K7

Chr11:89,488,776-89,644,713

63.8

PPY11 (HSA11)

Chr11:20,180,424-20,332,556

152

RP11-56J22

Chr11:20,180,424-20,332,556

  

61.2

HSA

       

HSA3 (MMU2)

Chr2:14,301,434-14,386,749

85

CH250-111O10

Chr2:14,301,466-14,396,994

CH250-4J18

Chr2:14,386,749-14,533,296

62.3

HSA6 (MMU4)

Chr4: 57,710,481-57,863,274

153

CH250-20M17

Chr4: 57,710,481-57,863,274

  

66.1

HSA11 (MMU14)

Chr14:17,109,970-17,281,610

171

CH250-111J7

Chr14:17,015,710-17,109,970

CH250-37N19

Chr14:17,281,610-17,299,898

63.4

  1. Seeding regions of the studied ENCs, defined by a splitting BAC (in bold) or by overlapping BACs mapping in opposite sides of the centromere (p arm/q arm). In the latter case the overlapping portion of the two BACs was assumed as the seeding point. In MMU17 (human 13), several contiguous human BACs gave split signals. The table lists the most external ones (in italics). The human genome was used as a reference genome for non-human primate ENCs. The macaque genome was used as a reference for the three human ENCs (see text).
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Genome Biology

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