Table 1 General features of the I. hospitalis genome
From: A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
Parameter | Value | % |
|---|---|---|
Chromosome size (bp) | 1,297,538 | Â |
Chromosome G+C content | Â | 56.5 |
Total number of genes | 1,494 | 100 |
Protein coding genes | .1,444 | 96.6 |
RNA genes | .50 | 3.3 |
Genes with function prediction | .885 | 59.2 |
Genes without function prediction | 559 | 37.4 |
Genes in ortholog clusters | .1,149 | 76.9 |
Genes in paralog clusters | .406 | 27.2 |
Fusion genes | .27 | 1.8 |
Genes assigned to COGs | .972 | 65.1 |
Genes assigned to arCOGs | 1,155 | 80.5 |
Genes assigned to Pfam domains | .875 | 58.6 |
Genes with signal peptides | .213 | 14.3 |
Genes with transmembrane helices | .216 | 14.5 |
Putative pseudogenes (RNA + proteins) | 12 | 0.8 |