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Table 2 Chinese muntjac sequences orthologous to Indian muntjac chromosome fusion sites

From: Comparative sequence analyses reveal sites of ancestral chromosomal fusions in the Indian muntjac genome

Name

Orthologous sequence*

Accession numbers†

Sequence length (bp)‡

Number of sequencing gaps§

(TTAGGG)n repeats (bp)¶

CMTel1

IMFS1

[GenBank:DP000822]

202,617

4

None

CMTel3

IMFS3

[GenBank:DP000821]

292,786

3

24

CMTel4

IMFS4

[GenBank:DP000820]

286,938

3

None

CMSat4

IMFS4

[GenBank:DP000823]

215,295

5

None

  1. *CMTel reflects Chinese muntjac sequence that is orthologous to the telomeric side of the corresponding IMFS sequence; CMSat reflects Chinese muntjac sequence that is orthologous to the satellite side of the corresponding IMFS sequence. CMTel sequences are not necessarily subtelomeric in the Chinese muntjac genome, but were likely subtelomeric in a shared ancestor with Indian muntjac. Similarly, CMSat sequences are not necessarily pericentromeric in the Chinese muntjac genome, but were likely pericentromeric in a shared ancestor with Indian muntjac (see text). The relationship between IMFS and CMTel/CMSat sequences is shown in Figures 3 and 6. Cytogenetic localization of individual BACs used to generate Chinese muntjac sequences is provided in Table 4. †The indicated GenBank accession numbers correspond to each sequenced BAC used to generate the assembled Chinese muntjac sequence. ‡Length of the assembled multi-BAC or individual BAC Chinese muntjac sequence. §Total number of gaps within the sequences of individual BACs used to generate the CMTel/CMSat sequence. ¶Total size of (TTAGGG)n block within the assembled sequence.