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Table 1 Top Gene Ontology biological processes in each module

From: Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases

Module

Activity

Ease score

Module 1

Protein biosynthesis

7.14E-06

 

Cell development

2.37E-05

 

Cell differentiation

4.88E-05

 

Macromolecule biosynthesis

8.56E-05

 

Cellular nerve ensheathment

1.11E-04

 

Neuron development

2.22E-04

 

Regulation of action potential

4.37E-04

Module 2

Response to other organism

0.004

 

Immune response

0.014

 

Defense response

0.020

 

Response to stress

0.029

 

Protein kinase cascade

0.030

 

Integrin-mediated signalling pathway

0.030

 

Myeloid cell differentiation

0.040

 

JAK-STAT cascade

0.042

Module 3

Homophilic cell adhesion

2.58E-11

 

Cell-cell adhesion

2.74E-09

 

Nervous system development

3.44E-09

 

Ion transport

0.007

 

Gamma-aminobutyric acid signalling pathway

0.009

 

Secretory pathway

0.019

 

Small GTPase mediated signal transduction

0.028

 

Sodium ion transport

0.036

Module 4

Cellular physiological process

6.91E-05

 

Transcription from RNA polymerase II promoter

0.008

 

Protein transport

0.014

 

Post-chaperonin tubulin folding pathway

0.019

 

Ubiquitin cycle

0.037

Module 5

Negative regulation of metabolism

0.011

 

Actin filament depolymerization

0.025

 

Barbed-end actin filament capping

0.025

 

Negative regulation of actin filament depolymerization

0.025

 

Negative regulation of protein metabolism

0.025

Module 6

Protein transport

0.008

 

Cell organization and biogenesis

0.011

 

Membrane fusion

0.028

 

RNA processing

0.029

 

RNA splicing

0.042

  1. Statistically significant (p < 0.05) biological processes present in each of the six modules of the co-expression network.