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Table 5 Present/absent call agreement among ISH and microarray platform thresholds with ISH thresholded by density

From: Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data

Structure ABA versus GNF1 ABA versus TERA1 GNF1 versus TERA1
Striatum 0.639* (8,669) 0.717 (4,614) 0.715 (3,398)
Cortex 0.600* (9,502) 0.713* (4,568) 0.750 (3,693)
Cerebellum 0.589* (8,726) 0.687* (4,631) 0.773 (3,490)
Hippocampus 0.600* (8,751) 0.717* (4,585) 0.753 (3,410)
Olfactory bulb 0.581* (8,811) 0.709* (4,582) 0.759 (3,437)
Hypothalamus 0.678* (8,571) 0.689* (4,566) 0.737 (3,479)
  1. The number of genes for each structure comparison is provided in parentheses. *Significance at α = 0.05 compared to GNF1 versus Teragenomics replicate 1 (TERA1) call agreement.