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Table 5 Present/absent call agreement among ISH and microarray platform thresholds with ISH thresholded by density

From: Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data

Structure

ABA versus GNF1

ABA versus TERA1

GNF1 versus TERA1

Striatum

0.639* (8,669)

0.717 (4,614)

0.715 (3,398)

Cortex

0.600* (9,502)

0.713* (4,568)

0.750 (3,693)

Cerebellum

0.589* (8,726)

0.687* (4,631)

0.773 (3,490)

Hippocampus

0.600* (8,751)

0.717* (4,585)

0.753 (3,410)

Olfactory bulb

0.581* (8,811)

0.709* (4,582)

0.759 (3,437)

Hypothalamus

0.678* (8,571)

0.689* (4,566)

0.737 (3,479)

  1. The number of genes for each structure comparison is provided in parentheses. *Significance at α = 0.05 compared to GNF1 versus Teragenomics replicate 1 (TERA1) call agreement.
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Genome Biology

ISSN: 1474-760X

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