Table 4 CRM-level sensitivity of data sets
From: Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs
Set name | CRMs* | Stubb†| CSam†| D2Z-set†| CisModule†| MCD†|
|---|---|---|---|---|---|---|
mapping3.adult | 34 | 0.35 (12) | 0.24 (8) | 0.21 (7) | 0.24 (8) | 0.26 (9) |
mapping1.adult mesoderm | 5 | 0.20 (1) | 0.20 (1) | 0.40 (2) | 0.00 (0) | 0.20 (1) |
mapping1.amnioserosa | 7 | 0.14 (1) | 0.29 (2) | 0.14 (1) | 0.00 (0) | 0.29 (2) |
mapping1.blastoderm | 77 | 0.53 (41) | 0.42 (32) | 0.21 (16) | 0.14 (11) | 0.12 (9) |
mapping1.cardiac mesoderm | 8 | 0.38 (3) | 0.25 (2) | 0.50 (4) | 0.12 (1) | 0.50 (4) |
mapping1.cns | 34 | 0.12 (4) | 0.26 (9) | 0.24 (8) | 0.15 (5) | 0.15 (5) |
mapping1.dorsal ectoderm | 8 | 0.38 (3) | 0.25 (2) | 0.00 (0) | 0.12 (1) | 0.25 (2) |
mapping1.ectoderm | 37 | 0.30 (11) | 0.38 (14) | 0.35 (13) | 0.22 (8) | 0.19 (7) |
mapping2.ectoderm | 51 | 0.24 (12) | 0.39 (20) | 0.25 (13) | 0.14 (7) | 0.18 (9) |
mapping1.endoderm | 16 | 0.25 (4) | 0.31 (5) | 0.19 (3) | 0.25 (4) | 0.12 (2) |
mapping1.eye | 6 | 0.00 (0) | 0.50 (3) | 0.17 (1) | 0.33 (2) | 0.17 (1) |
mapping2.eye | 18 | 0.33 (6) | 0.11 (2) | 0.11 (2) | 0.22 (4) | 0.11 (2) |
mapping1.fat body | 5 | 0.20 (1) | 0.00 (0) | 0.00 (0) | 0.00 (0) | 0.00 (0) |
mapping1.female gonad | 10 | 0.30 (3) | 0.10 (1) | 0.00 (0) | 0.20 (2) | 0.00 (0) |
mapping1.glia | 7 | 0.14 (1) | 0.29 (2) | 0.29 (2) | 0.14 (1) | 0.43 (3) |
mapping1.imaginal disc | 47 | 0.11 (5) | 0.21 (10) | 0.30 (14) | 0.19 (9) | 0.15 (7) |
mapping2.imaginal disc | 12 | 0.08 (1) | 0.17 (2) | 0.17 (2) | 0.08 (1) | 0.25 (3) |
mapping3.larva | 69 | 0.16 (11) | 0.30 (21) | 0.25 (17) | 0.19 (13) | 0.13 (9) |
mapping1.male gonad | 8 | 0.25 (2) | 0.25 (2) | 0.12 (1) | 0.12 (1) | 0.12 (1) |
mapping1.malpighian tubules | 4 | 0.25 (1) | 0.25 (1) | 0.00 (0) | 0.00 (0) | 0.25 (1) |
mapping1.mesectoderm | 5 | 0.20 (1) | 0.60 (3) | 0.20 (1) | 0.00 (0) | 0.20 (1) |
mapping1.mesoderm | 16 | 0.38 (6) | 0.31 (5) | 0.31 (5) | 0.31 (5) | 0.31 (5) |
mapping2.mesoderm | 45 | 0.36 (16) | 0.24 (11) | 0.31 (14) | 0.07 (3) | 0.22 (10) |
mapping1.neuroectoderm | 7 | 0.43 (3) | 0.71 (5) | 0.00 (0) | 0.29 (2) | 0.14 (1) |
mapping2.neuronal | 54 | 0.15 (8) | 0.35 (19) | 0.24 (13) | 0.09 (5) | 0.09 (5) |
mapping1.pns | 24 | 0.25 (6) | 0.29 (7) | 0.29 (7) | 0.17 (4) | 0.29 (7) |
mapping2.reproductive system | 21 | 0.29 (6) | 0.19 (4) | 0.14 (3) | 0.19 (4) | 0.24 (5) |
mapping1.salivary gland | 6 | 0.17 (1) | 0.17 (1) | 0.00 (0) | 0.17 (1) | 0.00 (0) |
mapping1.somatic muscle | 12 | 0.25 (3) | 0.33 (4) | 0.33 (4) | 0.17 (2) | 0.08 (1) |
mapping1.tracheal system | 9 | 0.11 (1) | 0.22 (2) | 0.22 (2) | 0.00 (0) | 0.00 (0) |
mapping1.ventral ectoderm | 12 | 0.50 (6) | 0.50 (6) | 0.25 (3) | 0.08 (1) | 0.17 (2) |
mapping1.visceral mesoderm | 12 | 0.17 (2) | 0.42 (5) | 0.25 (3) | 0.17 (2) | 0.50 (6) |
mapping2.wing | 33 | 0.24 (8) | 0.30 (10) | 0.30 (10) | 0.09 (3) | 0.18 (6) |