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Table 1 Statistics for the data sets in our benchmark

From: Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs

Name

Number of CRMs

Minimum CRM length

Maximum CRM length

Average CRM length

Total CRM length (Kbp)

mapping3.adult

34

83

2,013

748

25

mapping1.adult mesoderm

5

126

927

561

2

mapping1.amnioserosa

7

469

1,500

708

4

mapping1.blastoderm

77

126

1,833

906

69

mapping1.cardiac mesoderm

8

237

1,513

536

4

mapping1.cns

34

304

1,986

1,034

35

mapping1.dorsal ectoderm

8

267

1,657

842

6

mapping1.ectoderm

37

105

2,015

839

31

mapping2.ectoderm

51

105

2,015

815

41

mapping1.endoderm

16

220

1,373

579

9

mapping1.eye

6

187

1,930

824

4

mapping2.eye

18

187

2,015

868

15

mapping1.fat body

5

375

529

456

2

mapping1.female gonad

10

83

1,657

442

4

mapping1.glia

7

515

1,890

899

6

mapping1.imaginal disc

47

177

2,015

938

44

mapping2.imaginal disc

12

490

2,015

1,248

14

mapping3.larva

69

176

2,015

892

61

mapping1.male gonad

8

200

1,319

862

6

mapping1.malpighian tubules

4

540

1,373

782

3

mapping1.mesectoderm

5

601

1,415

913

4

mapping1.mesoderm

16

105

1,415

544

8

mapping2.mesoderm

45

105

1,513

518

23

mapping1.neuroectoderm

7

343

1,360

575

4

mapping2.neuronal

54

177

2,013

988

53

mapping1.pns

24

177

2,013

976

23

mapping2.reproductive system

21

83

1,801

734

15

mapping1.salivary gland

6

295

1,890

786

4

mapping1.somatic muscle

12

312

1,513

718

8

mapping1.tracheal system

9

515

2,015

1,236

11

mapping1.ventral ectoderm

12

343

1,657

700

8

mapping1.visceral mesoderm

12

183

1,104

451

5

mapping2.wing

33

177

2,015

1,029

33

  1. Each control region is ten times the CRM length.