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Table 8 Expression of APC, DC and NK signature genes in IKDCs

From: Novel insights into the relationships between dendritic cell subsets in human and mouse revealed by genome-wide expression profiling

         

Ratio

Probe set ID

Gene

CD8 DC

DN DC

CD4 DC

pDC

cDC

IKDC

NK

IKDC/DC

NK/DC

IKDC/NK

APC signature genes

           

98035_g_at

H2-DMb1

2,701*

3,416

4,281

1,105

2,722

179

36

0.2

<0.1

5

92668_at

Btk

454

259

331

252

277

91

20

0.4

<0.1

5

94834_at

Ctsh

1,606

2,650

2,862

2,993

1,653

129

20

0.1

<0.1

6

94285_at

H2-Eb1

8,183

7,761

7,201

5,285

14,120

1,018

74

0.2

<0.1

14

101054_at

Cd74

9,094

7,810

7,313

5,158

12,258

1,031

55

0.2

<0.1

19

92633_at

Ctsz

520

1,246

1,171

887

750

117

44

0.2

<0.1

3

94256_at

Clic4

1,668

1,067

1,234

739

717

440

295

0.6

0.4

1

160781_r_at

Unc93b1

683

710

789

301

138

36

22

0.3

0.2

2

Pan-DC signature genes

           

95295_s_at

Flt3

2,769

2,004

2,231

2,069

2,547

270

45

0.1

<0.1

6

100095_at

Scarb1

716

405

333

297

398

125

73

0.4

0.2

2

Non-DC signature genes

           

96172_at

Gimap4

29

62

20

314

319

5,274

982

263

49

5

92398_at

Vps37b

111

139

44

76

56

462

159

11

4

3

161265_f_at

Lck

99

80

105

235

199

1,991

366

25

5

5

NK signature genes

           

97781_at

Ncr1

20

20

20

73

39

1,483

120

20

2

12

97113_at

Fasl

20

28

20

22

30

440

263

15

9

2

102272_at

Cd160

75

107

62

82

58

780

246

7

2

3

100764_at

Il2rb

26

45

40

50

65

84

501

1

8

0.2

99334_at

Ifng

20

20

20

29

38

203

109

5

3

2

93931_at

Prf1

33

21

35

94

86

839

1,287

9

14

1

92398_at

Vps37b

111

139

44

76

56

462

159

11

4

3

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Genome Biology

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